Gene detail

Detailed information of ANN21798-RA in Montipora grisea

Genomic Location: Scaffold_20__1_contigs__length_3961929:189995...196852
NR annotation: RKU15522.1, glycine dehydrogenase (aminomethyl-transferring) [Candidatus Poribacteria bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN21798-RA

ATGACAGATTTCATCGAATCCGTTGTACCGGCAGGCATTCGTTCATCATCTCCTTTCAGTTTGGGTGATGACGCGCGCGGGCTTTCAGAATCGGAAGCGCTTGCGGCATTAAAAGAGCTCGCCTCTCAAAACAAGGTTTTCCGTTCCTTTATCGGCATGGGCTACTATAACTGCATCGTGCCGCCAGTCATCCAACGAAATATCCTTGAAAATCCTGGTTGGTATACCCAATACACCCCTTATCAGGCCGAAATTTCACAGGGCCGTTTAGAAGCATTGCTAAACTTCCAAACAATGGTTATTGACTTGACCGGGCTCCCCATCGCCAATGCTTCGCTCCTAGATGAGGCAACTGCCGCCGCTGAAGCGATGGGAATGTGTCTCGTCCACACAAAACAGAAAGAATGCCGCGACTTTTTCGTTTCGGAAACCTGCCATCCACAAACAATCGCCGTTTTACAGACGCGCGCTGAACCCCTCGGCATCCAACTGCACATCGGTAACCATCGAAACGTGGATTTCGAGGCACCTATCTTGGGGGCAATTGCGCAATATCCCGCGACTGATGACATCGCTATCGGTAGCGCGCAACGGTTTGGCGTGCCCCTCGGCTACGGCGGACCCCACGCTGCATTCCTCGCCACACGCGACGAACTTAAACGCAGAATACCCGGACGGATTGCAGGTGTCTCGTACGATGCCATCGGAAACCCAGCTATTCGATTGGCACTCCAAACGCGAGAACAACATATCCGACGTGAAAAGGCAACGAGCAACATCTGCACGGCGCAAGTACTCCTTGCTGTCATGGCAGGAATGTATGCAGTCTATCACGGGCCTAGAGGCCTTAGGCGAATTGCCGAACGAATCCATGGACTCACCAACACCCTACGCGCAGGGCTTGAGAGATTGGCCTACACCACAGGCGATGCCCCTTGCTTTGATACGCTCTGTGTTGCACTACCCGCTGTAGAGCCTGAGGTACCGCTTGCTGCTGCACGCGCGAGACAGATAAATCTCCGCGCAATTGATTCTACTCACGTCGGGATATCCCTTGACGAAACGACTACGCCTGCCGATGTTGAGGAATTGCTTGTTATTTTTGAGACGTGCGCGCAGGAGCCGCACTTACAAAGCGAACCTACAGCGTTTGAAATTCCCGCCGAATTACAACGAAAAACACCCTATTTTACCCATCCTGTTTTCAATAGTTACCACTCTGAAACCGAGATGCTCCGTTATATCCACAGGCTTCAAACCAAAGACCTCTCCCTTGTAAACGCGATGATACCGCTCGGTTCCTGCACCATGAAACTCAACGCCACGGCGGAGATGCTACCGGTAACATGGCAAGGGTTCAGCGAACTACATCCGTTCGTTCCGCAAGAACAAGCGAAAGGCTATCAACGTCTATTTTTACAATTGGAGACATGGTTAGCCGAGATAACGGGTTATAGCGATATCTCATTGCAACCGAATGCCGGTTCACAGGGCGAATATGCTGGCTTGTTAGTGATATGCAAATACCACCAGAGCCGCGGCGAGTCACATCGCAACGTCTGTTTAATCCCAACATCTGCTCACGGTACGAATCCCGCGAGTGCAGTGATGGCAGGGATGCAAGTTGTCGTTGTCGCATGCGATTCAGAAGGGAATATCGATCTTGGAGATCTCCGAGCAAAGGCAGAAATGCATCGTGACAAACTTGCCGCTGCCATGATAACCTACCCTTCAACACACGGTGTGTTCGAAGAAAAGATTCGAGAGATTTGCGACATTGTTCATGAATTCGGCGGGCAGGTCTACATGGATGGCGCGAATCTGAATGCGCTTGTGGGCATTGCACGGCCAGCAGAGCTCGGTGCCGATGTTTGCCACCTGAATCTCCACAAAACGTTCTGTATCCCGCACGGCGGTGGCGGACCGGGAATGGGACCCATTGGTGTCAAGGCGCACCTCACCGATTTCTTACCAATGCATCCCCTTGTGCCTGTCGGCGGTAAAGCAGGAGTCGGTGCCGTATCCGCTGCACCGTGGGGAAGCCCCGGGATTCTGCCTATTTCTTGGGCGTACATTGCCATGATGGGGGCAGACGGGCTTGCATCCGCTACGGAAGTTGCGATCCTCAATGCCAACTATATTGCGAAACAACTTGCCCCGCACTATCCTGTGCTTTATACAGGAAAGCGCGGCTTAGTCGCTCACGAATGTATCATTGATTTGCGTGCCTTCAAAAAGAGTGCGGATGTAGACGTAACCGATGTGGCGAAACGGCTCATGGATTACGGATTTCACGCGCCGACTGTCTCCTGGCCAGTGCAAGGGACAATGATGATTGAACCGACAGAGAGCGAATCGAAAGCCGAACTAGAACGGTTCTGTGACGCGCTGATTTCGATACGTGAAGAGATAGCAGAGATTGAGGCAGGAGTCGCGGATCGGCAAGACAACGTACTGAAAAATTCACCGCATACTGTAGAAATGGTGACCCAGTCTGATTGGTGCCATCCGTATTCACGGGCAGGGGAAGTGGGGTTTCATACCGCTAAACTTCTCACTGTTGAGCATAACGATGTTGTGCTCATTGATGAATCTGAGGCCGCCTGCGACCGGGTGAATGAACAATTAGACTTGCAGACCTTATGCGGGTCGGGCGCATCTCCGCGCCTTCTCAAAACCGCCGGGATTGACGAAGCCGGGCTGCTCATCGCCGTTACGAATAGCGATGAAATTAATATGCTCGCTTGTCAGATAGCCGAGCGGTACCACGTTGGCACAAAAATCGCGCGCGTCTCAAATCCGGACTATTTCTCGACAGAAAGTGGCTTGACTCCGAAGGATTTCGGCATAGACCTGCTGATTAATCCAGAACAACTCTGTGTCTCTGAATTTGTTCGGCTCTTGCAGATTCCTGAAGCACGAGAAATTGTTGATTTTGAGAATGGCAAAGTCCAACTGGTCTCCTTTCGCGTGAAACAGTCAAACCCGTTAATCGGAAAATCGCTCTCCGAGTTAGATGCAAATGGGCTGCTGACCGATATCCGCTTTGCCGCGATTAGCCGACGGCGACGCGTCAACAACGGAGATACGACAAATAATGCCCGCCGGCACATTATCATTCCAAGGGGTGCCGATGTTTTGCAACAAGGGGACGATGCCTTTGTGATTGGGAGCGCGATCGCTGTTGAACAGTTGCTACGCATCAGCGGCATCACCTTCAATCAACATCTGGATCGGGTTATCATTGTGGGAGCAAGCCCTATCGGCATTGGCCTCGCGCGAGCCCTTGAAGGAAACGACACCAACGTTAAGCTGATCGAACCCGACTTAACGAAAGCCCAAATCGCATCGCAAATGCTAAGACACACGACCGTTTTGCACGGAGATTACCTCCAATTCAGGCTGCTTGAGGAAGCCGGAGTAGAGGATGTCAATGGATTTGTCTCCGTCACAGGTGACGATGAAAACGATATTATGGCATGTATGACGGCAAAAGAGAACGGGGCCCAACGAGCACTCGCGCTCGTTCAGCAGCCACGCTATCTTCCCTTGTTAGCACGGATTCCGAGGCTTGATGGTGCAGTGAGTCGGCACCTCACGGTTGTCAGCAATCTCCTGCGGCTCATCCGGCGTGGAAATATTATCTCCGTTGCCTCGCTCCATGGTGTAGATGCCGAGTTCAAGACACTTGAAGCCCAGAGCGATTTGGCGGCGTTTGTTATCTCAGCAGTACTCACCTTGATTGTAGGTTTAGGCCTCCGTTTCAGTATCCGCGGGCGACAGGAGGAACTCGGCATCCGCGAAGGCTTCGCCGTCGTTGCTTTAGGATGGGTTGTCGTCGCGCTCTTCGGAGCGTTCCCTTACTTGTTTGCTGGCGTGTTTCACATAGATGGCCGTTCACCCTGGGTAGCGTTCTCCTTCTGCTATTTTGAATCCATGGCAGGGTTTTCAACAACCGGTGCGACTGTGCTGGCAGAGATTGAACACCTTTCGCACGCAATGCTCTTCTGGCGGAGTTTTTCACACTGGCTCGGTGGGATGGGAATCGTTGTCCTGGCTGTTGCTATCCTTCCGTTGCTTGGCATCGGGGGCATGCAGCTCTTTCGCGCCGAAGCACCGGGACCGCAAACCGATCGGCTCACGCCCCGCATCGCGCAAACAGCGAAGCTCCTCTGGGGTGTCTATCTTCTCCTCTCTTGTGTTGAAACTGCACTCTTGAAGCTCGGCGGTATGTCTCTTTTTGACGCGCTCTGTCATACGTTTGGCACGATGGCAACCGGTGGGTTCTCTACAAAAAACCTCAGCATTGCGCATTATGATAGTGTCTATGTTGACATGGTGATCAGCCTCTTTATGTTTCTCGCCGGCACCAATTTCGCCCTTCACTACCGCGCTTTCCGAGGGGATGTCAAAGCCTATTTCCAAGATACAGAATTCAAATTCTACTGCATCGTTATTGCGGTGAGCATTACCTTAATCTCATGGAATACGATCAGGTTTCAGGTAGATGGGGAAATTCCTTACGATTCGATGTGGACATCCCTACGTTATGCAACATTCCAGGTCATGGCTATCATCACAACCACCGGCTACGGCACTGCTGACTTTGAAAAGTGGCCTGCCCTCTCCCAATTCATCTTAGTGACGCTTATGTTCTACGGGGGCTGTGCAGGTTCAACCGGCGGCGGCATGAAACAGATACGGTTCCTACTCCTTATCAAACAGAGCGGGGCTGAAATCAAACGTCTCATCTTCCCGCATGCTGTCCTGCCTGTTCGCGTGAACGACCGGGCGATTATGAGAGCCAAAAGGGAAAGGAGCTCGCGCAGAACCCGAACGCCGCACTCGTTTTCTATTGGCGTGAACTTGACCGGCAGGTCCGAAGCACCGGCATCGTTCAAAAAAATGACAGTGGAAGAATCGGATGCTTATTTTGCCAGTCGCCCGGTTGAGAGCCGACTTGCCGTGTGGGCAGAACGTCAAAGCCGCGTTATCACAGGGCGAGCACACCTAACGGAAGGCTTCAGACAGGCAGAACAGACCTATTCCGCCGATGCCGTTCCACGGCCACCTTATTGGGGAGGCTACCGGCTCGTGCCCAATCTGTTTGAATTTTGGCAGGGTTCAAAAGACAGACGCATTCGGAATTGGAAACTGCCGCTTCCTGTAGAAGACTACAATCCTCAAACCGATACTTGGATTCAGAAACAGGACATGCCCGTTTCCCGCATCAACTTTTCTCTCGAGGTGGTGGATAGAAAAGTCTATCTCATCGGTGGGAGTGAAGGCTTTGGTGACGGACAGCAACAACGAATGGACCGCGTGGACATCTACAATCCTGCTACCGATACGTGGGCGCTGGGGGCCGAACATGCCGACCCGGCGTGA

Transcript

ANN21798-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3M9G1	Glycine dehydrogenase (decarboxylating) OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=gcvP PE=3 SV=1
B2J427	Glycine dehydrogenase (decarboxylating) OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=gcvP PE=3 SV=1
Q8YNF9	Glycine dehydrogenase (decarboxylating) OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=gcvP PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002709 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02347 all species →	GDC-P	Glycine cleavage system P-protein	Domain	Interproscan
PF02254 all species →	TrkA_N	TrkA-N domain	Domain	Interproscan
PF10590 all species →	PNP_phzG_C	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region	Domain	Interproscan
PF21478 all species →	GcvP2_C	Glycine dehydrogenase, C-terminal domain	Domain	Interproscan
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan
PF02386 all species →	TrkH	Cation transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036721 all species →	Homologous_superfamily	Regulator of K+ conductance, C-terminal domain superfamily	Interproscan
IPR049315 all species →	Domain	Glycine cleavage system P-protein, N-terminal domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR003148 all species →	Domain	Regulator of K+ conductance, N-terminal	Interproscan
IPR003437 all species →	Family	Glycine dehydrogenase (decarboxylating)	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR019576 all species →	Domain	Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal	Interproscan
IPR006037 all species →	Domain	Regulator of K+ conductance, C-terminal	Interproscan
IPR020581 all species →	Family	Glycine cleavage system P protein	Interproscan
IPR049316 all species →	Domain	Glycine dehydrogenase, C-terminal domain	Interproscan
IPR012349 all species →	Homologous_superfamily	FMN-binding split barrel	Interproscan
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR003445 all species →	Family	Cation transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11773 all species →	GLYCINE DEHYDROGENASE, DECARBOXYLATING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan
GO:0004375 all species →	Molecular Function	glycine dehydrogenase (decarboxylating) activity	Interproscan
GO:0006544 all species →	Biological Process	glycine metabolic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008324 all species →	Molecular Function	monoatomic cation transmembrane transporter activity	Interproscan
GO:0006546 all species →	Biological Process	glycine catabolic process	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005960 all species →	Cellular Component	glycine cleavage complex	Interproscan
GO:0016594 all species →	Molecular Function	glycine binding	Interproscan
GO:0019464 all species →	Biological Process	glycine decarboxylation via glycine cleavage system	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0006812 all species →	Biological Process	monoatomic cation transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN21798-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.