Detailed information of ANN21859-RA in Montipora grisea

Genomic Location: Scaffold_20__1_contigs__length_3961929:1463146...1464387
NR annotation: RKU15489.1, serine--tRNA ligase [Candidatus Poribacteria bacterium]
Species Montipora grisea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q39PU1Serine--tRNA ligase OS=Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15) OX=269799 GN=serS PE=3 SV=1
B9M3Q9Serine--tRNA ligase OS=Geotalea daltonii (strain DSM 22248 / JCM 15807 / FRC-32) OX=316067 GN=serS PE=3 SV=1
A5GD47Serine--tRNA ligase OS=Geotalea uraniireducens (strain Rf4) OX=351605 GN=serS PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003530 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00587
all species →		tRNA-synt_2btRNA synthetase class II core domain (G, H, P, S and T)DomainInterproscan
PF02403
all species →		Seryl_tRNA_NSeryl-tRNA synthetase N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002317
all species →		FamilySerine-tRNA ligase, type1Interproscan
IPR042103
all species →		Homologous_superfamilySerine-tRNA synthetase, type1, N-terminal domain superfamilyInterproscan
IPR006195
all species →		DomainAminoacyl-tRNA synthetase, class IIInterproscan
IPR002314
all species →		DomainAminoacyl-tRNA synthetase, class II (G/ P/ S/T)Interproscan
IPR010978
all species →		Homologous_superfamilyClass I and II aminoacyl-tRNA synthetase, tRNA-binding armInterproscan
IPR045864
all species →		Homologous_superfamilyClass II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Interproscan
IPR015866
all species →		DomainSerine-tRNA synthetase, type1, N-terminalInterproscan
IPR033729
all species →		DomainSerine-tRNA ligase catalytic core domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43697
all species →		SERYL-TRNA SYNTHETASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000166
all species →		Molecular Functionnucleotide bindingInterproscan
GO:0004828
all species →		Molecular Functionserine-tRNA ligase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006434
all species →		Biological Processseryl-tRNA aminoacylationInterproscan
GO:0004812
all species →		Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0006418
all species →		Biological ProcesstRNA aminoacylation for protein translationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01875SARS, serS; seryl-tRNA synthetaseEC:6.1.1.11
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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