Gene detail

Detailed information of ANN21902-RA in Montipora grisea

Genomic Location: Scaffold_20__1_contigs__length_3961929:2090400...2093054
NR annotation: MCE2413767.1, acetolactate synthase large subunit [Candidatus Poribacteria bacterium]
Species abbreviation MGRIS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN21902-RA

ATGAAAGCATCGGAACTGACCGTTAAATGTTTGGAAAACGAAAACGTTGACTATATTTTTGGAATACCGGGCGAGGAAAATCTGGATTTGATGGACGCGCTATTGGAATCCAAAATTCAATTTATTCAAACGCGTGATGAACGCGGTGCCGCCTTCATGGCAGATGTTTACGGCAGACTCACAGGCAAGGCAGGCGTGTGCCTGGCTACCCTCGGGCCCGGAGCGATGAACCTTGTCACAGGGGTTGCGGATGCCAATATGGATAGGGCACCTTTAGTCGCAATCACTGGGCAAGCGAGCCTGGACAGGATGCACAAAGAATCGCACCAATATATGGATGTCGTCTCCGTGTTCAAACCGATGACAAAGTGGAATACGCTCGTTCACCTACCCGAGATCCTTCCGGAATCTATCAGCAAAGCGTTTAAGATCGCAACCAGTGAAAAGCCCGGTGCAACGCACATCGATTTTCCAGAGGACGTAGCCAAAATGCAAATCATGGCAGAGCCGGTTCCACACGACTTTCCGAGTGAGGTAGAACCTGTGGCTACATGTCTCGTACGCGCAGCGCAATTAATTAACGATGCCAAACAACCGATTATCCTCGCAGGGAACGGGGTCATCCGCCAAGGTGCCTCCCGAATGCTAACCCAATTTGCCGAACTGACCAATATCCCAGTCGCACATACCTTTATGGGCAAGGGGAGCATCCCCTGGACGCATCGACTCTCTCTGCTAACCGTGGGACTGCAAGCGCGCGATTTCGTCTCTTGTGGCTTCGATCGTGCAGACCTGGTTATCGCTATCGGTTACGATATTGTAGAATACCACCCACGCCTCTGGAACCCGAATCATGATAAGAAAATTGTCCATATTGATACCGAACCGAGCGAAAGCGATGCTGCTTACGTAACCAATGTGGAGATGATTGGAAACATCAAACAGAGTCTCATACACCTGATGACAGAGGAGATTCATCCCAAGGATGCCGATTATGCTGAGAACACATTACGAAAAATCATCCTTGATCAGCTCTCGGAACACCGCGATGATACAGCATTTCCGATGAAGCCACAAAAGGTTTTGAGTGATGTGCGTTCCGTGCTTGCTGAAGATGACATTCTCATCTCTGATGTCGGTGCACATAAAATGTGGATCGCACGGATGTACCCGTGTTATCAGCCAAATACGTGTATTATTTCCAACGGATTCGCCTCCATGGGAATCGCGATGCCGGGAGCTTTCGTTGCAAAATTGATCCACCCGGAACGCAACTGTTTGGCAATCTGTGGCGATGGGGGATTCTTAATGAACTCGCAGGAACTGGAAACCGCAGTGCGGACAGGTGTGCCTTATGTCACGCTTATTTTCAATGACGAAGCTTACGGACTGATTGAATGGAAACAAATGAACACCTTTGGCAGAGCGTCACACATTGATTTCACCAATCCCGATTTTGTCAAATATGCCGAAGCTTTCGGTGCCAAAGGCTACAGGGTGGAGGGAAGTGACGAACTGGTACCAATACTCAGGGAGGCGTTCAGCCAGAAAGTGCCTTCTGTCATCGATTGCCCCGTAAATTACGCTGAAAACTTACAGACCAATTTTAAGGAAACCAAGGCCCCTGTCTGTGCCCTTCTTGTGGCATCTAACGTAACGAAGGAAACAAACGATATAATGGCAGTTTCGACAATTGAGTGGGTAGACGGCAGAATTCGGATGATTGACCAAACGCTGTTGCCCAATGAATTTAAACAAATTTATTGCGACGATCTCCCGTCGGTTTGGGAAGCTATTAAATCTCTGCGCGTACGAGGCGCGCCCGCAATCGGCATCGCCGGGGCTCTGGGCGCAGTGCTGGGAATTTGGGACTCCACGGCTCAAACCTACGCGGAATTCGCCGCGGAACTAAAATCCGCTACGGATTACTTGGCTACCTCGCGGCCAACGGCTGTCAATCTATTTTGGGCACTGGATCGGATAAACCGGACGGCTGAGAAAAACCGTCATTTTCAGATTCCCGCGCTCAAGGAGGTGCTGCTTACTGAAGCTTTGGAAATAATCGATGAGGATAAAGCAATGTGTCGCGCTATCGGCCAGCACGGCATGACACTGTTGAATGAAAACGATACTATTCTGACCCATTGCAATGCCGGCGGCTTAGCCACATCCGATTATGGCACGGCGTTAGCTGTTATGTTCAGCGCGCATGAAGCCGGCAAGCAGATTCAGGTTTACGCCGATGAGACACGCCCGCTGTTACAGGGGGCCCGGCTGACTACTTGGGAACTGATGCAAGCAGGAATTGATGTGACGCTGATATGTGACAACATGGCGGCACAAGTGATGAAAGAGGACAAAATCCAGTGCGTTATTGTTGGTGCCGACCGGATTGCCGCTAACGGTGACACAGCGAATAAGATCGGCACCTATAACGTGGCTATCCTTGCAGATGCCCATGGCATCCCCTTTTATGTCGCCGCCCCGACTTCAACGCTTGACTTCGCGCTTGAAACCGGGGGCAGAGATCCCTATTGA

Transcript

ANN21902-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q746Y8	Methylthioribose-1-phosphate isomerase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=mtnA PE=3 SV=1
Q2RKL8	5-deoxyribose 1-phosphate isomerase OS=Moorella thermoacetica (strain ATCC 39073 / JCM 9320) OX=264732 GN=drdI PE=3 SV=1
Q39ZK3	Methylthioribose-1-phosphate isomerase OS=Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15) OX=269799 GN=mtnA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007062 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01008 all species →	IF-2B	Initiation factor 2 subunit family	Family	Interproscan
PF00205 all species →	TPP_enzyme_M	Thiamine pyrophosphate enzyme, central domain	Domain	Interproscan
PF02775 all species →	TPP_enzyme_C	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	Domain	Interproscan
PF02776 all species →	TPP_enzyme_N	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037171 all species →	Homologous_superfamily	NagB/RpiA transferase-like	Interproscan
IPR029061 all species →	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR000649 all species →	Family	Initiation factor 2B-related	Interproscan
IPR011559 all species →	Family	Initiation factor 2B alpha/beta/delta	Interproscan
IPR012000 all species →	Domain	Thiamine pyrophosphate enzyme, central domain	Interproscan
IPR011766 all species →	Domain	Thiamine pyrophosphate enzyme, TPP-binding	Interproscan
IPR042529 all species →	Homologous_superfamily	Initiation factor 2B-like, C-terminal	Interproscan
IPR012001 all species →	Domain	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	Interproscan
IPR005251 all species →	Family	Methylthioribose-1-phosphate isomerase	Interproscan
IPR045229 all species →	Family	Thiamine pyrophosphate enzyme	Interproscan
IPR027363 all species →	Homologous_superfamily	Methylthioribose-1-phosphate isomerase, N-terminal	Interproscan
IPR029035 all species →	Homologous_superfamily	DHS-like NAD/FAD-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18968 all species →	THIAMINE PYROPHOSPHATE ENZYMES	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0044237 all species →	Biological Process	obsolete cellular metabolic process	Interproscan
GO:0044249 all species →	Biological Process	obsolete cellular biosynthetic process	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0030976 all species →	Molecular Function	thiamine pyrophosphate binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0003984 all species →	Molecular Function	acetolactate synthase activity	Interproscan
GO:0005948 all species →	Cellular Component	acetolactate synthase complex	Interproscan
GO:0009097 all species →	Biological Process	isoleucine biosynthetic process	Interproscan
GO:0009099 all species →	Biological Process	L-valine biosynthetic process	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01652	E2.2.1.6L, ilvB, ilvG, ilvI; acetolactate synthase I/II/III large subunit	EC:2.2.1.6	Pantothenate and CoA biosynthesis	ko00770	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.