Gene detail

Detailed information of ANN21997-RA in Leptoseris scabra

Genomic Location: Scaffold_4__1_contigs__length_45231618:41621026...41639407
NR annotation: CAH3137441.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN21997-RA

ATGTTTTCTAGGCCCGGATCGGAAGACACAGAAAGTGATCTGCTTCGTCATCAAGAGGAGTTCCTTGCGGGTCGTTTAAATCCATCAGCAACCGTCGTTCGTTCAAACAAAGAAGGAGAAACGCGCTCTGGAGACAAGCGCGTCTCGTCATGTGGACCTCAAGTGGAAAGAGACGTTGTAACTTTAGATGGACTTCCAACTGTGCAGCCATCAAGCCTATCAGAGCCTGGTTTCCCACCAAGAAAGAAGTCAAAGTTTAAAACAAGACGTCAAAATGCTCATAAAAAAGAACAAGATACTGGGGAAGCTATGGACTGTGCAGAACTACTCGACATTCATGACAGACATGTGACATCAGTGCTTTCTCAAATTAAGGAGAGAGACATTCAATGCGGCAGTGTTATGGCTCCCAAAGTGTCTCTGAGAGGTTTTCCAGTGGCTCTTCATCGTGGAAATATTGACGAGCAGGCTTCCTCATCCAAAAGGAACAACTCAGAATGTAGAAAGAGTTTATTTGCTCAACAATTTGCTGCATCAGGAAGTGTTACATTTGGTGTCCCAGAGAAAAAAATAAATAACTTACAGCTATCAACAGAAACAAGCAAGGTTGTCCAAATGGCTTCAAATACAGCAGCTCAGTTTCCAAGATCATCTGTTATATCTGGTGAGGGGTTATTGGGATGTGAAGGTGACAAAATGCTTTCTAACAGAGCTGTTGAAGAAATACACGATGAGAACTTAGCTAAGCTGAAATCCATGACACAGGATGAAATACTGGAGGAGCAAGCCAGGATTAAGTCCTCACTGGATCCCAGTCTTATTGCTTTTTTGACATCTCGGCAAAAGAAGACTACAAGCGAGTCAATGTATACAGGTACAAGCTTGGATGGAAACAATGGTGATTGCCACAGCAACATTACAAGCTGCACAAATGAAAAAGAAACAGGCCATGGTGACAAACATGTTCATTTCAGAGAGGACGTCCAAATAATTACACAGGAAAATCAGCAAAAAATGATGGCACAAGAACAGCAAGAAGAGTCAGATGGCTGTATAACAATCGGAGATCTGAAGGTATCCAGCAAATGGCTTCACATGGGTACAGTTGAAACAGAAAAACTGGAATGGATGAAAAAGTGCCCATCGCCCAGTGCTGTGGACAGAAAGCAAGGTAATCAAGCTCGCTTTGACTTTGATGGTAATTTAGTCTCCCAGACTGATAACATTCCAGAGTACCTGGGCCTTCATCACCATGGTGATGATCCAAACTCTCCTGGTTATACCCTGGAGGAGTTGTTTGTTTTAGCAAGAAGCAGTTTTTTACAGCAGCGAGTGTTTGCTCTTCAAGTCTTGGCCAGGATCATAAGACAGGATCAGCTGGGTTCATTTCAAGGGCATCTCAGTGATGATGTACTGTCAGTACTTCTTGATGCAGGAGTCCTTTTTCTCTTGCGGTGGGCATTAGACGACACCTCTGAAGCAGTAGTGGCAGTTGCTATCCAGGGATTTGCTGCTGTCCTTGTTGTACCTAGTGACAAGGATTCAGCTGATAAGCTGTTCAGCTTTCCCCAAGGACATGAGCTTCCAGCACTGTATGCTGTGACTGAAAACAAAGAAGACAAGTCTGGAAAGGATGACGAGGAAGAAGAGAAGAGATTAACAGATGCTGAGCTACTCAAACAAGATACTGTCAAGGGTCTGATCCAGATGAGCATTTTACCAAGACTAAGATACATCCTTGAAGTCTGCAGCCCAGCAGCGCCAACTGTTAATGATGTGCTGGATATTCTGACAAGAATTTCTCAGTATTCAACACAAGCTGCGAATGAAGTGTTAAAGTGTCCAAGACTTATCGATACCATCTTTTCAAACTTCCTTCCTCTCTCATGGAAAACATTGGATTTGAAGGCTGGAACAGCGCATGGTCAGCCTGTGAGTGCAGCAATGCGACTTCTCAGAGCTTTGTGTTGTGCAGGGAGGAACATGGCTGCAGTTTTGATCTCAAAGTACAATTTGCTTGACAGAGTGATGCGCTACACAGCTCTCTCCCCCAGAAGCATGCAGATGGAGTTGAACGAAGCATGTTCATTATACAATGAAAGCTTGAGAACATGGAGAATTTGTGTGCTGTATGGCTTGGGCTGTGACGCTGTGAGGGAGATGCACTCTTTTTTCATTGAGCACTTGCAGTCAATTCAAAGTCTGTCAATTTTAGAGAAAACTTCTGAAGGCAAATCAGAGCTTTCCTGTGCCACAGCCATATTTGGTATCATAGAAGCTGCTATTTACGCTTCTGGGGCAACTACTGTCCAGAAGGCTCAAGTGACAGCCTCTACTCCTGAACAGTACTGTGGGATAGATTCCTTACCTCCTCAGGCTCTCAACTGGAGTCATGTGACTGGATTCCTACCTCTCATTGGTGGATGTGTCACCAAGTGGATTAAGCAGATTGTGGATTCTAGTAATCCTGCATGTCAGACGTTATTTTCCTCCTGGGCCTGTCACGGGCTGCATGTCTTTGCTCACAGTCACTATCATGGTCTCTGGGCTGCTGTTGTCCATGCTGAGGTTCGCGTATTCTATCCGTTGGCACCGCCTTTTCACCGCGGTCTGTTCCGGACTGCTCCGAACCTGCTCTATCCGCGGGAACAGCGTCCGGCTCAAATGCGTCTTCACTGTCGGAGTCATCACACTGAACCGATTCTCTACACCCTGGTCGAATTCATGGGATCCACTAGTGAAAAGGCAACCATCCCGGTGTTCAAGAGGGTATTTGACACATATGGAGTACCAGAGGAGATCAAATCGGATAACGGTCCACCTTTCAACAGCCATAAATTTGAAGAATTCTCGCAAGAAGAAGGGTTCAAACACCGGAAAGTCACACCAGGGTGGGCAGAAGCCAACGGCGACGTCGAAAGGTTTATGCAGAGAATAAAGAAGACTGCACGGATCGCTGCATTGGAAGGCAAACACGCTACCGGTGCTGGGTTGCTTTGA

Transcript

ANN21997-RA

Protein

Uniprot

Uniprot term	Description
Q3T1I9	RNA polymerase II-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Rpap1 PE=1 SV=1
A0JN53	RNA polymerase II-associated protein 1 OS=Bos taurus OX=9913 GN=RPAP1 PE=2 SV=1
Q80TE0	RNA polymerase II-associated protein 1 OS=Mus musculus OX=10090 GN=Rpap1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08621	RPAP1_N	RPAP1-like, N-terminal	Family	Interproscan
PF08620	RPAP1_C	RPAP1-like, C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR039913	Family	RNA polymerase II-associated protein RPAP1/Rba50	Interproscan
IPR013930	Domain	RNA polymerase II-associated protein 1, N-terminal	Interproscan
IPR013929	Domain	RNA polymerase II-associated protein 1, C-terminal	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21483	RNA POLYMERASE II-ASSOCIATED PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0006366	Biological Process	transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20826	RPAP1; RNA polymerase II-associated protein 1	-	Transcription machinery	ko03021	deepkoala