Gene detail

Detailed information of ANN22015-RA in Montipora grisea

Genomic Location: Scaffold_20__1_contigs__length_3961929:3614094...3616360
NR annotation: MYC74656.1, hypothetical protein [Candidatus Poribacteria bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN22015-RA

ATGCTATATCAGATTCAACTGACAGCCTTGCCGGTGCAACTCGTGATAGAACGGTTTTGGCAGAGCCACGACACATCCGTGAAACTCCGTCCATTCGTAGAACAACTCGTTGAGGGCACCACTGCACATTTGGACGCAATTGATGCTCTACTCCAAAACACCTCCAAAAATTGGAAACTCCACCGGATGCCGGTCGTAGACTTGTCTATCCTGCGATGTGCGACGTATGAAATTCTCTATATCAGCGACATTGATCCAGCAACCTCAATTAATGAGGCTGTTGAGATTGCCAAATCTTACAGTACCCCGGATTCGCCGAAATTTATCAACGGCATCCTAGATAGCATCCAAAAAACACGCGTAAACGCCGCGCAAGAATTCAAATTTGTTGACGCGTTCGGTGGAAAAGGAGAAGGAAAGGGACAGTTCGCAAAAACCTTGTTCATGGCGTTTGGATCCGACGGTGCTATCTATGTTACCGATACAGATAACTTCAGAATCCAGAAATTCAGTGAGGCAGGGGTTTTCATCTTTGATATCCAGATGAAAGAGGCAGGCGAGTTTCGATTCATTAACCCTACGGCTCTTGCCGTTGGGGTTGACAATGCCATCTATGTCATGGATTGGATATTAATGGAGATTTCAGGAGTAGACTCGCAAGATGGCCCGAAAATCTTTAACTACGCTCCCTGTGTCCACAAATTTGATGCCCAAGGGCAGTTTATTGCCAGCTATCCTATTCAGGATTTTAGTCAGAGGCAGGATACCCTGGAAGCAGCTGCTCCCGGCCTCGATGCGGATGGCAAATACGCCCTCATCATTCCACACGGCGACACAAAGCGGCAATTTGTGCTCACAGTGGATGCACACAGCAACCTCTATATCTGCGACAGTGGTGTAATTTACAAACTGGAGGCAAACGGTAAACCGATTGCTCGCTACACCATCGCCCAACCCGGCGCGGGACAAGTCGTTCACCCAGTGGATTTGGCTGTGGACAAAGCAGAAAATCTCTATATTGTTGATGAAAAGGGACATCGGGTGTTAAAATATAGTGCTGAAGGAAAGTTTTTGCACGCTTTCGGCGAATATGGCGACGCTGCTGGGCAATTTATCGCGCCCTTTCGGATAGCAGCGTTAGCCGATGGAACGCTCCTTGTTGCTGACACGGCGAAGTACTTAAAGGATTTCACCTCTACACTGCCAAAGCGGTTGGATGATCCTATACTACGCTATAACGGCAATACACGGCGGTTTCGCTACCGCTTGCGGCGCGTCCAACGCTTCACCACAGTGGGAGCGTATACCCAAAAACTGCTTATCCCCTTCCAACGTGAAGCCGAAACAGATGTCGCGCTTCAGCTCAAGGGGATAGATGCGCGAGGCAACCTCTACTATCTCAACCCAACGGTGTTGCGATTCAGAAAATATGCCCCCACCGTTTCACTGCTTTCTTCAATGTTCCAAACCGAACTGAAACTGCGCTACACACGCGCCCTGCAGGATGTTGAAATTGACAATCAGGATGACCTGGATGCCGATCTGTATACCAAATCCGATTTTGACGAGCAGATCGTTCGGGACGCGGCAAATGCCAATTTAACCTTCTCTTACAACTTCAACGAGGATTACCAGCTCTCGCTTTCCAATCGCCTCACTTACGTCCGAATGACCGATACGAGTTATTATCGCACCCAGGATTTTGAGGACTTCCGAGGGCGTTTCAATCAAGATGACAGGTCAACTGAAACCTCTTGGGATGACCGGATTCAACTTGACTTTACGTGGATAAGAAACCATAGCGTCTACAACTATCGGGAGACACGCGCGTTTGCTTACTTCAGCGTCATACGCCTCGATTTCATGAACGATGCCCTCGATTCGTACAATTCCCGCTTCTTTGATTTCAGCGCGGAACTCTCCGACTGGGGTGGCGGCATCTATTATGACTTAAGCCGAACGTTTCGCCTCCATTTTGAAATCACCCACTTCTTTGGGGTGAACAATTACACCTATATTGACGAAACGAATGTCCTCTATGCCACAGGCTTTCAAGAAGCAGACATGCTACGCGCGGTGCTCCTCATAAATGGAGTTTTTTAA

Transcript

ANN22015-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8RAD1	Transcription antitermination protein NusB OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=nusB PE=3 SV=1
B0K9D9	Transcription antitermination protein NusB OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) OX=340099 GN=nusB PE=3 SV=1
B0K0U6	Transcription antitermination protein NusB OS=Thermoanaerobacter sp. (strain X514) OX=399726 GN=nusB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0022283 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01029 all species →	NusB	NusB family	Domain	Interproscan
PF01436 all species →	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011605 all species →	Family	NusB antitermination factor	Interproscan
IPR001258 all species →	Repeat	NHL repeat	Interproscan
IPR006027 all species →	Domain	NusB/RsmB/TIM44	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR035926 all species →	Homologous_superfamily	NusB-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11078 all species →	N UTILIZATION SUBSTANCE PROTEIN B-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006353 all species →	Biological Process	DNA-templated transcription termination	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN22015-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.