Gene detail

Detailed information of ANN22019-RA in Leptoseris scabra

Genomic Location: Scaffold_4__1_contigs__length_45231618:42039365...42040919
NR annotation: XP_020619050.1, serine palmitoyltransferase small subunit A-like [Orbicella faveolata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1RLT2	Serine palmitoyltransferase small subunit B OS=Danio rerio OX=7955 GN=sptssb PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0013235 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11779 all species →	SPT_ssu-like	Small subunit of serine palmitoyltransferase-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024512 all species →	Family	Small subunit of serine palmitoyltransferase-like	Interproscan
IPR051900 all species →	Family	Serine palmitoyltransferase small subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47084 all species →	SERINE PALMITOYLTRANSFERASE SMALL SUBUNIT A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004758 all species →	Molecular Function	serine C-palmitoyltransferase activity	Interproscan
GO:0017059 all species →	Cellular Component	serine palmitoyltransferase complex	Interproscan
GO:0046513 all species →	Biological Process	ceramide biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26384	SPTSS; serine palmitoyltransferase small subunit	-	Sphingolipid signaling pathway	ko04071	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.