Gene detail

Detailed information of ANN22071-RA in Leptoseris scabra

Genomic Location: Scaffold_4__1_contigs__length_45231618:42679025...42688678
NR annotation: XP_020618789.1, visual system homeobox 2-like [Orbicella faveolata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9IAL1	Visual system homeobox 2 OS=Gallus gallus OX=9031 GN=VSX2 PE=2 SV=1
Q61412	Visual system homeobox 2 OS=Mus musculus OX=10090 GN=Vsx2 PE=1 SV=1
P58304	Visual system homeobox 2 OS=Homo sapiens OX=9606 GN=VSX2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008160 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03826 all species →	OAR	OAR motif	Motif	Interproscan
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR003654 all species →	Domain	OAR domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR023339 all species →	Domain	CVC domain	Interproscan
IPR052294 all species →	Family	Visual system homeobox transcriptional regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46892 all species →	VISUAL SYSTEM HOMEOBOX 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:1990837 all species →	Molecular Function	sequence-specific double-stranded DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09336	VSX2, CHX10; visual system homeobox protein 2	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.