Detailed information of ANN22082-RA in Montipora grisea

Genomic Location: Scaffold_18__1_contigs__length_5111168:1169875...1171200
NR annotation: MYA69595.1, transcription termination factor Rho [Candidatus Poribacteria bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O67031Transcription termination factor Rho OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rho PE=3 SV=1
Q9HTV1Transcription termination factor Rho OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rho PE=3 SV=1
P52155Transcription termination factor Rho OS=Pseudomonas fluorescens biotype C OX=335 GN=rho PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07498Rho_NRho termination factor, N-terminal domainDomainInterproscan
PF00006ATP-synt_abATP synthase alpha/beta family, nucleotide-binding domainDomainInterproscan
PF07497Rho_RNA_bindRho termination factor, RNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011129DomainCold shock domainInterproscan
IPR011112DomainRho termination factor, N-terminalInterproscan
IPR041703DomainTranscription termination factor Rho, ATP binding domainInterproscan
IPR004665FamilyTranscription termination factor RhoInterproscan
IPR011113DomainRho termination factor, RNA-binding domainInterproscan
IPR000194DomainATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR036269Homologous_superfamilyRho termination factor, N-terminal domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46425TRANSCRIPTION TERMINATION FACTOR RHOInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0006353Biological ProcessDNA-templated transcription terminationInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0008186Molecular FunctionATP-dependent activity, acting on RNAInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03628rho; transcription termination factor Rho-Messenger RNA biogenesisko03019deepkoala

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