Gene detail

Detailed information of ANN22099-RA in Leptoseris scabra

Genomic Location: Scaffold_4__1_contigs__length_45231618:43099478...43101571
NR annotation: XP_044166186.1, uncharacterized protein LOC122950159 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN22099-RA

ATGGGGGCTTCAGAAATAGTAAAAGGTAGTCAAAATTTGTCTGCGGAGTCGCGCAATGCTGATAAATGTGCCTTCAGTGAAGCGCGGCCTGCTGAGTCTTTGAGTGATAGTTCTAATAGCGCGTCAGCTGATCAACTTTCTGAAATGTGCCAGTCTTGTCGTTCCGTCGGAACTAGAGTACCCTCAAAACGATCCACTTCTCTCCATGATAGTTTTGTTGTTATTTTAACGCTTGTTGTCGCTATTGTTATTAAAATACTTGAGTTGGTAGAAGGGGTCGTAACACGAGTGGTGTTTACGTGTTGTCTTGACAAGAGTTCGTCAAGGTTATCAGTCTCGTCTACTCAAAGTGATATACCGAGTAAGGGGTTTAATGAGCGCTCAAAAGAAGAAAATTCCCCTGTTTTAAAAGTCGCCGATGAAGAAGAGGTTAAGCCGGCGTTTGTGGTAGTTCAAGTAAACAATAATGACGTATTAGACGGAGAAGGTGTTGATGCTGATGAGGTCAAGTTTAATAGTGTTGTTTTGAAAAGCGATGATGTTGACCCTGCTAGCCCTGTGTTCAGTGAATTGCATGCTACGCAGCCAAGTGATAAGTTGTTTTCGCCGTCTTCAACTTCGACTAGTGTAGATAGTTGTCGTACCAAGGTGGTCAAAGAGGGAGATTTTCCTTTAAAGGCATCTTCTGAAGTAAAGTTGAAGGATGTTTGCAGTGGTCAAGCTGTTTTTTCTGGCATGGAAGTAAGTTCAGTGGACGGTGTTTGTTTTCCTTTTGTAGCTAGTAATTCCACTATTTTGGTTACCATAGGAGGTTTTCAATTTCACGCCCTAGTTGACACTGGAGCTGCTGTCACGGCAGTCAGTGCGGATGTTTGGAATACATTTTTGAAGTGCTCTCACCCAAATTTAGATACTTCAACTCCCGGCAAAGTTACTTCAGTGAGTGGTCGTTCTTTAGTCACGTTGGGAAAGTCGATGTTTTCATTCGTTATTGATTCCGAAATTTTTCCCTTTGAAGCTCATGTGATTCAAGATTTAACGTTTGATGTGATTATTGGTAGGGATTTTCTTCGGAAGTTCTCTTCAAGAATTGATTTTGTGAAGGGTGTTGTTGAGTTCTCCCGAGACGAGAACCCCTTGCCCTTTTGTGATGCTGGTGATGATACCCCAGTGGGTGAAGATTCTCTTAGTGATTTTGTTTGTTCTGTTCATGCTGATTTTTCTTTTACAGTTCCGCCTGAATCAGAATTTGTAGTTATGGGTAAATTGAATTTACTGCCTAAAGAAAAGGAAACATGTGGCTTAGTCGTTCCTAGATCTAACCTGTCGCACCGTTATTCGATTTTCGGAGCTTCGGAGCTTGTCAAGGTTACTGATGATGGTACTGTTCCTATTAGGATGGTGAATCCTTCTGCTCAACCAGTAAAGATTTTTCGTAGGACAAAATTGGCTGATTTTGAATTGGTTGCTGATGATATAGCAACATACGAGCTTCGTGAGCCTGAAGAACTTGATATTTCTGCTGTGTCTTGTGATTCGGATGAACGTCTCCAGCCGCAAGATGATTATTCGGATCTTCCTGATTTGTCAGATAGTGTTTTGAATGATGGCGATAGAATTAAGTTTCGAAATTTGTTTAGGAAATACAGTGATGTTTTTGCTTTTTCAGAGGATCAGCTGGGTAGGACATCACTTGTTCAACACGTGATCGATACCGGGGATGCTATGCCAATTAAGCAAAGGCCTTACCGTACTAGTCCTGAGGGTAAGCAAGAGATCGATCGCCAAGTGGGAGAAATGCTTCAGAAAGGAATTATTCAGGAATCGGTTTCACCTTGGAGTTCACCCGTGGTCTTAGTTAAGAAAAAAGATGGTTCTTTTAGGTTTTGCATTGATTTTCGCAAGGTTAATCAGATCACGAGAAAGGATAGTTTTCCTATGCCTGTTTTGATATTTGGTCAAATCGTAGGAACTCATTTAGCCAGTGGTTATTGCCTACTCAGTGAAAATTTGCATCTTTATTACCATTTTTTGCAACAACAAAAAAAGGAAAACGAAAAAAGGGGAAACAAATATAGTTCAGGTTCTAAATAA

Transcript

ANN22099-RA

Protein

Uniprot

Uniprot term	Description
P20825	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
Q7LHG5	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03539	Spuma_A9PTase	Spumavirus aspartic protease (A9)	Family	Interproscan
PF13975	gag-asp_proteas	gag-polyprotein putative aspartyl protease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001641	Domain	Spumavirus aspartic protease A9	Interproscan
IPR053134	Family	RNA-directed DNA polymerase homolog	Interproscan
IPR036157	Homologous_superfamily	dUTPase-like superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan