Gene detail

Detailed information of ANN22118-RA in Leptoseris scabra

Genomic Location: Scaffold_4__1_contigs__length_45231618:43301722...43310807
NR annotation: CAH3180498.1, unnamed protein product [Porites evermanni]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN22118-RA

ATGCGTGAAGTCGTACTAACCGCGGCGAGCCTGGCTCTTACAGGCGCTGTTGTCGCCAACGCTTACTACCAAAAACATCAGTTTTATCCGTCAGTTGTTTACCTCACCAAGTCAAGTCCCAGCATGGCGGTTTTGTACATCCAAGCGTTTGTGCTTGTGATTCTTCTCGGTAAAATGATGCGGAAAGTTTTCTTTGGACAGCTGCGAGCTGCAGAAATGGAGCATCTGATTGAGAGATCATGGTATGCGGTCACAGAAACTTGCTTGGCATTCACCGTTTTCCGTGATGACTTCAGTCCCCGATTTGTTGCCCAGTTTACTCTTCTCCTGTTTCTGAAGTGTTTCCATTGGTTGGCGGAAGACAGGATTGACTATATGGAGAGAAGTCCTGTGTTATCATGGGTCTTCCATGTACGAGCAGTACTTCTGCTCATGTTTCTAGGCATGGTGGACGCGGTCTTGGTTCATATTGCATACAATACTACAATGCAAAGTGGGGCATCAGTGCAACTGGTGTTTGGATTTGAGTATGCTATTCTCCTGACAATAGTGGTTACCATACAGATGAAGTATGTCTTGCATATTATTGACCTTAGAAGTGAAAATCCTTGGGACAACAAAGCTGTTTATCTTCTTTATACTGAATTAATAACAGGTTTCATCAAGACTGTTCTTTACTGCTGTTTTATGGTCATCATGATTAAAGTTCATACATTCCCATTGTTTGCTATCAGACCCATGTACCTAACACTAAGAGGGTTTAAGAAATGTATCAGTGATGTCATCATGTCTCGGCGAGCTATCAGAAACATGAACACACTTTATCCAGATGCTACTCCTGAAGAACTCCAACAAGGTGACAATGTATGCATCATATGCCGAGAGGAAATGACAACAGGCTGCAAAAAACTGCCATGCAATCACATATTCCACACTAGCTGCTTAAGATCTTGGTTTCAACGGCAACAGACATGTCCGACATGTAGAATGGATGTCCTTAGACCTCAGCCACCAACTCCACAGCAGCAGCAGCCCCCGCAGCCAGCCGCAGCACCCCCCTTTGGTGGCTTCCCTCCCATGGGGGTCCCCCCTCCAATGGGACTTCAACCTACTCCTGGGGTACCACCGCAAGTTGCCATGAATGCTGCTCCTGGTATGTTTCCTGGTTGGCCGCCAATGGGTGTACCTCCAGTACCACCACCTGCCCAACCACCTGCTGCCGCAGCAGCACCAGCACCCACTCCCGGTGCACCTCCCGCATCTATGGCGCCTCCAGCCCCCGGTGCTGGCAATGTGCCACAAGACGCTAGCCAAACTCAGATGCCAGGTTTTGGATTACCTCCACCATTTATGTTTCCTCCTCCGTTCATGATGCCACCGTTCATGTTTGGTGGCCTAAATTCTTCTCCCAACATAGACTTCTCATCTCTGAATATTGAACAGCTGGTAGCAGTTGAAGCTCAAGAGAGGCAGAATGTGGAGGCGAGGATTAACATGTTACGCACTATTCATGCGCTCCTGGATGCAGCCATAGTTCAGTTAAATCAGTATACTCAGATGGTCAACGAACAGAGCCAACCGCCCATCACTGTTTCTGAGCCGTCCACTTCAGCAGGAGGCTCTGGATCAGGGCCGGCTGGAGCAGGACCGTCAGGAGTAGAGCCTTCACAGGTGGGAGCAACAGAGGCAGGCCCTTCAGGGTCGGGGACAGGAATGCCCTTTGGAGAAGGACCTACAGCCGCAGGGCCCTCGGGACTAGCGACTACCGTGGGAGCTTCAACACAAACATCACTTTCATCTCAACCAGGTCCTTCCTCAGCTCCTGAGCCTGAAGACATTGGAGCTACATCTGCAGCTGCGGTTGCTGCAGTTAGAGACAATTCAGAAACGAACACAGAGTTAAATGACGAGAATTCTGAAATTAGGCGAAGAAGGCTGGAGCGGTTCTCAAGCTCTATAAGTCAAGAGAGCTCTGACATAGACAAAAACGACTGA

Transcript

ANN22118-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9DBY1	E3 ubiquitin-protein ligase synoviolin OS=Mus musculus OX=10090 GN=Syvn1 PE=1 SV=3
Q6NRL6	E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis OX=8355 GN=syvn1-a PE=2 SV=1
Q5XHH7	E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis OX=8355 GN=syvn1-b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005946 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050731 all species →	Family	HRD1 family E3 ubiquitin-protein ligases	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22763 all species →	RING ZINC FINGER PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for ANN22118-RA. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10601	SYVN1, HRD1; E3 ubiquitin-protein ligase synoviolin	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.