Gene detail

Detailed information of ANN22122-RA in Montipora grisea

Genomic Location: Scaffold_18__1_contigs__length_5111168:1889702...1893861
NR annotation: RKU19681.1, lysine--tRNA ligase [Candidatus Poribacteria bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN22122-RA

ATGAAGTTTGTGCCGGTGCGTTCAGGCGTACTATTCCCGCTTGCCGCTGCCTGCATCTGGACAGCATTGGAATGGGTGCGGAGTTGGATGATAACAGGATTCCCGTGGGGCAGTATTGGCTACTCACAATGGAACAATCTACCGGGTATCCAGATCGCTTCCCTCTTCAGTGTACACGGCATTAGTTTTGTGATAGTGCTCTTCAATGCTGGCCTCGCCACCTTCCTTTGTAACCGCAACCGGTGGCGACAAGAAATTCGTGCTTTAGCTCTTCCGGTGATATTAACAATCTTTTGTTTCGGTTACGGTGCCTTCCAACTCCAAAAAGCTGAACCTTTAGACCGTGAGGCGAATGCCACAGTACCTGCAGACATCGAAACCTTAAACGTCGCACTTGTCCCCGGTAATGTCTCACAACTACAGAAATGGGATGTGAATCAATTCCCGGCAATTTTGCAGCGTTACATCAACTTGACATACAAAGCGAGCAGAGGAGAGCCAGACTTAATTGTATGGCCCGAAACATCAATTCGGAGCTGGGCATTGACGGGTGAGTGGCCTAGAGCCTACGGGAGGTTTTCCCGAATGCTCCGTGATACATCACTTCCGATACTCGTCGGTACAGCTAACAGAGGAAAAACAGACGAAGCAATCGGCAAATTTTCCAAAAATATTGCTAAAAAAAATGAACCGATATACAACCGCGTCCTTTCAATATCTCCAAATGGAAAGATACACGGAGACTATGCCAAGATGCATCTTGTGCCGTTTGGCGAGTACGTGCCGCTGACAAACCTGCTTCCGGATTTTATCCCCGATTTTATCCAGTTTGAACCCTTTGCGCATGGAAAAACAGTAAACCTTTTACCCGTGTTTGTCGTTAAAAATGAAATGGACACACAGAAAGTAGAGATCGGTGCTTCGATCTGCTTTGAGTCGGTGTTTCCAGACGAATTTCGTAGACCTGTACAAAAAGGGGCTAGAGTGATGGGAATCTTCACGAACGATGCTTGGTTCAAGGGGACTGCTTTCCCCGAACTGCATCTGTCAATGGCACCTTTCCGCGCGATTGAGAACCGTATCGCGGTGTTCCGCTGCGCAAACGGCGGATTTACCTGTGTTGTAGACAAATTCGGTAGGATAACGGGGCCTATGGTGGCACCGAATGATACGCAAGAGAACTCGGAGGTTATCTTTGACCTTGCTGCAAAACGAAAAGAATTAACAGAGCTTGAGGAGGTAACTATCGCTCCAGATTTTTGGCGTAATACACAGCGCGTTCAAAAAATCAATCAACGTATCGCAGTCCTCCGAGATGAAGTTGGCAAATACGAGGAACTGAACCTCAAGATCCAAGACATCCATACGCTCATTGAACTAGCGATTGAAGAGAATGATGAAAGTTTACAGATGGAAATTGGAGATGAATTGGAGAGTGTCACCGGTCACCTTGAACAGATGGAACTCCAGTTAATGTTGAATGGTGAGTTTGATGAGAATAATGCCATTCTCAATATCCATTCTGGCGCAGGCGGGATTGACGCACAAGATTGGGCAGGGATGTTGATGCGGATGTACCTCCGTTGGTGTGACAGACGGGACTATCAAACGCAAATAGTAGACATTACTGTCGGAGACGAAGCTGGCATCAAAGGAACCACAATTCTTGTTACAGGGCCCTCCGCTTACGGTTATCTCCAGGCTGAAATGGGTGTGCATAGACTCGTCCGCCTGTCGCCTTACGATTTTAACAAGCGACGACATACCTCTTTTGCCGCTGTTGATGTTACCCCCGAAATCGATGATACTGTGGAAGTGGACATTCAAGCAGAGGACCTGCGCATAGATAGTTATCGAGCCAGTGGTGCCGGTGGACAACACGTCAATGTCACGGACTCAGCAATTCGGATTACGCATAAACCGACAGGGATTATTGTTCAGTGTCAGAATGAGCGTTCTCAGCACAAGAACCGAGAAATCGCCATGAAACTCCTCCGATCACGCCTTCATGAAAAATATCGTGCTGATCGGGAAGCAGAACTTGTGAAACAGCGGAGTGAACGCTTGGATATCGACTTCGGTAGTCAAATCCGGTCGTATGTGATGCACCCTTACCAACGCGTTAAGGATTTACGAACAAACGTTGAAACTGGGAACAAACTAAAAAAACACCTTGAGAAGGAGGAACAATTTGTGGAAGAGACGAAGGACCTAATTCAGCAACGTCGTGACAAGTTGGGCGAAATCCGCCAATTTGGTGTAGAACCGTATCCGCACAAATACGAGCCTACACATACGACATCCACAATTCACCGAGATTTTGCCGATATCCAGGAGACACCTGACGAAACGCATACCGTTCGCATCGCTGGTAGAATCATGACAAAGCGCGACCACGGCAAAAGCAGCTTCGCACATCTACAAGATGGCGAAGGCCAAATTCAGGTTTACGTCCGGCGCGACAAAATCGGCGCGGAACCCTATAAAATCTATCGACGTTTTGATAGCGGTGATATTGTCGGGACTGAAGGAACGGTCTTCCGAACACGCACCGGTGAATTGACAGTGCTCGTTGATTCCATAGAACTCCTCTCCAAATCTATCCGACCACTCCCGGAAAAATGGCACGGTTTGCAAGATAAACAGACGCGCTATAGACAACGATACGCCGACCTCATCATGAATCCTGAGGTGAAGGACGTTTTTCTTAAAAGGACACAAATTGTTCAAGCGATTCGCGATATGCTCAACACTCAAAATTTTATTGAAGTTGAGACCCCTGTTCTTCAACCAATTTATGGCGGTGCAAACGCTCGCCCGTTCACAACATATCATAACACTTTGGAACAGTCGCTTTATCTGCGAATCGCGAATGAACTCTACCTCAAGCGCTTGATAGTCGGGGGATTTGAACGGGTTTATGAATTCTCACGCGACTTCCGAAACGAAGGAATGGATAGAGACCATAATCCTGAATTTACAATGCTTGAACTCTATCAAGCTTATGCTGATTATATTCAGATTATGGAACTCACTGAAACCCTGATCGCTGATACAGCGAAAACTATTCATGGGGCAACGCAGATCCCCTATCAGGAGCATGAACTCGATCTCACGCCACCGTGGCGTAGGTTGAGCATGGTCGATGCGGTTCGAGAACACAGCGGTATAGATCCTGTTCCGCTGTCAGCAGATGAGTTGTACAAGACAGCCGTTGGCGCGGGTGTTGAATTAGTTGGCGATGAAACGAAGGGTAAAATTATCGCTGAACTCTTTGATAAATTTGTGGAATCAAAACTTATTCAGCCGACATTTATAACGGATCATCCGATTGAAGTCTCGCCATTTGCGAAAAAGAAGCCTGACAATCCAGAGTTCGTCGAACGTTTTGAATTCTTTATCTGCGGAATGGAGGTCGGAAACGCTTTTAGTGAACTCAACGATCCGATTGACCAACGCCAACGCTTTTTGGATCAAGCAAACAGTTTAGAGGCTGGCGATGATGAAGCTTTTATGGTAGACGAGGATTATTTACGCGCATTGGAATACGGTATGCCGCCGACGGGTGGACTCGGTATCGGTATTGACCGCTTGACGATGCTGCTAACGAACCAATACTCCATCCGTGACGTGATCTTGTTTCCACAGATGCGCCCGGAAAGTATAAAATGA

Transcript

ANN22122-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A5D5Q4	Lysine--tRNA ligase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) OX=370438 GN=lysS PE=3 SV=1
Q8R7N1	Lysine--tRNA ligase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=lysS PE=3 SV=1
B0K5C0	Lysine--tRNA ligase OS=Thermoanaerobacter sp. (strain X514) OX=399726 GN=lysS PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003612 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00472 all species →	RF-1	RF-1 domain	Family	Interproscan
PF03462 all species →	PCRF	PCRF domain	Domain	Interproscan
PF00795 all species →	CN_hydrolase	Carbon-nitrogen hydrolase	Family	Interproscan
PF00152 all species →	tRNA-synt_2	tRNA synthetases class II (D, K and N)	Domain	Interproscan
PF01336 all species →	tRNA_anti-codon	OB-fold nucleic acid binding domain	Domain	Interproscan
PF20154 all species →	LNT_N	Apolipoprotein N-acyltransferase N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002313 all species →	Family	Lysine-tRNA ligase, class II	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR036526 all species →	Homologous_superfamily	Carbon-nitrogen hydrolase superfamily	Interproscan
IPR018149 all species →	Domain	Lysyl-tRNA synthetase, class II, C-terminal	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR000352 all species →	Domain	Peptide chain release factor class I	Interproscan
IPR004374 all species →	Family	Peptide chain release factor 2	Interproscan
IPR005139 all species →	Domain	Peptide chain release factor	Interproscan
IPR006195 all species →	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan
IPR004563 all species →	Family	Apolipoprotein N-acyltransferase	Interproscan
IPR045853 all species →	Homologous_superfamily	Peptide chain release factor class I superfamily	Interproscan
IPR003010 all species →	Domain	Carbon-nitrogen hydrolase	Interproscan
IPR004364 all species →	Domain	Aminoacyl-tRNA synthetase, class II (D/K/N)	Interproscan
IPR004365 all species →	Domain	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	Interproscan
IPR044136 all species →	Domain	Lysine-tRNA ligase, class II, N-terminal	Interproscan
IPR045378 all species →	Domain	Apolipoprotein N-acyltransferase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42918 all species →	LYSYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004824 all species →	Molecular Function	lysine-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006430 all species →	Biological Process	lysyl-tRNA aminoacylation	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0003747 all species →	Molecular Function	translation release factor activity	Interproscan
GO:0006415 all species →	Biological Process	translational termination	Interproscan
GO:0016149 all species →	Molecular Function	translation release factor activity, codon specific	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016410 all species →	Molecular Function	N-acyltransferase activity	Interproscan
GO:0042158 all species →	Biological Process	lipoprotein biosynthetic process	Interproscan
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04567	KARS, lysS; lysyl-tRNA synthetase, class II	EC:6.1.1.6	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.