Gene detail

Detailed information of ANN22159-RA in Montipora grisea

Genomic Location: Scaffold_18__1_contigs__length_5111168:2476747...2479425
NR annotation: MYA71350.1, tryptophan--tRNA ligase [Candidatus Poribacteria bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN22159-RA

ATGTCAAAATTAGGACTTATTCATTACAACTACGCCAGTAAATCGCTTGATGATTTTCTGAAATTTACGAGCGAAACAGGCTTCGGTTATGTTGAACTCCAGATCGGCGATGTATGGAATTCGGAGACTGCCGATCCTGAAAAAAACGCCGAAGTCGTGAGAAAACAAGTTGAGGGTTATGGTTTGCAAGTCTCTGCACTTGCAGCGGGAAATGACTTTGTTCTGCTGGAAGAAGAAGCCATCCGTTCCCAGATTGACCGGATGGAACGCGTTGCGGGACTCGCTAAACTGCTCGGTACTTCAGTACTCCGTACCGAAGGCGGTTCCGCGAAAGACGCTGTCCCTGAAAGTCAATGGATTGAAGCGATGGCTGGCTGTCTAAAACGATGCCTCGAATTTGCTGAACGAGATGATGTCTACTTGGCAGTGGACAACCACGGTATCGTTACAAACGACGGCGATTTACAGGTAGAACTCTTTGAGCAGGTCGGTTCTAAATATGTCGGTGCGAATATGGATACGATGAATTACCGCTGGGCGGGCCACGATTTAGAGATGGTAGGTAGATACTATGAAATCGTCGCGCCATATACGTTACACACACACCTGAAAGACGGTACAGGTTCACGTGGCAATTATCGCGGCGAGGCACTCGGCGAAGGCGAAATAGATCTCGCGAAGGCAATTCGCTGCTTGAGAAAAGTAGGCTACGCTGGCGTCTGGTGCTGCGAGTATGAGGGTAGAGAAAACGACGGCACGGACTTTGGGACAAGCGATGCTTATGTGGGGATCATGAAGGGAGTGATCCTCGGTATCAACCCGGATGTGCTGGTGGTCGATCTCACGCATGCCATCCCACCGCAGGATATCCACGATGCTGCACTTTCAATCCATTCTATACCTCGCTATTTTCCAGAAGGCACGATCCACACTATCGTCGTCGATCCCGGTGTAGGAAGCGACCGACGAGCGGTGGTTTGCAAAATAGATGGTGCTTTTTTCGTCTGTCCTGACAATGGAATATTGACCTATCTGCTACACGAGATTGAGAACGCTGGCGGACAGTCAGTAAGTGCAGTGGCAATTCAGAACAAGACTTACTATCTACCAGAAGTGAGCAATACCTTCCACGGTAGAGATATTTTCGCACCTGTTGCGGCACACTTATCACTTGGTGTGCCGCCTGCGAACATCGGTCCACCGGTGGAAGATCTCGTCCAACTCCCGATTCCAATCCCTCAGGTTTCTGGAAATACGATCATCGGGCAAATTGTCAAAATTGACAGATTTGGGAACGCGATAACAAACGTATCGGAAAAAGTGCTTGCTGGAATTGGGGGCACTTACGAAATTAGAGTCGGAAGTACGCGACTGATGCGGCTCAACCGTGCTTACGCTGAATCTGGCATCGGACTTAAACCGACAGGTCCTCCGCATATCGGCAACTACCTCGGTATGCTTAACCCGTCGCTGGAACTGGCGGAAAAGTATCAGGCACTCTACTTTATACCGGATTACCATGCCTTGACTACAGTCAGAGACGGAAAGGAGTTGGCTAATCTTACCTATCAAGCAACAGCGACGTGGATAGCATTAGGGTTAGATCCAGATGAGGTAATTATCTACCGCCAATCGGATATTCCAGAGGTGTTTGAATTGGCGTGGGTATTGTCTTGTTTCACAGCAAAAGGTTTGCTGAACCGATCGCATGCCTACAAAGCGATAGTTGATAACAACATTGCCGCAGGTCGAGAAGACGATAAGAACATTAACATCGGGCTTTTTAGTTATCCTGTCTTGATGGCAGCAGATATCCTGCTTTTCGGCACGCATGTTGTCCCGGTAGGACTTGACCAACAGCAACACCTCGAAATTACGCGCGATATCGCGCTGACCTTCAACAATACCTATGGCACTGTCTTGACAATCCCGGAAGCTATAATTCGGAAAGAGGTAATGACTATCCCCGGTATTGATGGTAGAAAGATGAGCAAAAGTTATAACAACGTCATCCCGATTTTTGCACCGTCGGACCAAGTGCTTAAACCCGTTAAGCGTATCGTAACGGATTCCCTACGTCCCGAAGAGCCGAAGGACCCGGATGCATGTAACATCTTTGCGATCTATCAGCACTTTGCGGATGCAGATGCCCTCGCTGCGAAGCGGAAACTCTATCTTGAAGGTGGGCTCGCCTACGGTGCGATGAAACAGGAATTGTTTGAATTACTGGAATCTGCTTTTTCCAGCAAACGTGACCGGTATAATGCGTTGATAAACAACACCGATGCATTAGACAATATACTCGCAAAAGGCGCAGAAAAAGCACGTGCTCTCGCGGCACCGATTATGGCAAAAGTCCGTAAAGCAGTTGGTGTGAGTACAACTCGCTAA

Transcript

ANN22159-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HVX6	Tryptophan--tRNA ligase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=trpS PE=3 SV=1
Q88NA1	Tryptophan--tRNA ligase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=trpS PE=3 SV=1
Q7WGI7	Tryptophan--tRNA ligase OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) OX=257310 GN=trpS PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004173 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20257 all species →	SAM_HAT_C	SAM hydroxide adenosyltransferase C-terminal domain	Domain	Interproscan
PF01887 all species →	SAM_HAT_N	SAM hydroxide adenosyltransferase N-terminal domain	Domain	Interproscan
PF01261 all species →	AP_endonuc_2	Xylose isomerase-like TIM barrel	Domain	Interproscan
PF00579 all species →	tRNA-synt_1b	tRNA synthetases class I (W and Y)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050203 all species →	Family	Tryptophan--tRNA ligase	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR046470 all species →	Domain	S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal domain	Interproscan
IPR023228 all species →	Homologous_superfamily	S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal domain superfamily	Interproscan
IPR036237 all species →	Homologous_superfamily	Xylose isomerase-like superfamily	Interproscan
IPR046469 all species →	Domain	S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal domain	Interproscan
IPR013022 all species →	Domain	Xylose isomerase-like, TIM barrel domain	Interproscan
IPR023227 all species →	Homologous_superfamily	S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal domain superfamily	Interproscan
IPR001412 all species →	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan
IPR002306 all species →	Family	Tryptophan-tRNA ligase	Interproscan
IPR002305 all species →	Family	Aminoacyl-tRNA synthetase, class Ic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43766 all species →	TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004830 all species →	Molecular Function	tryptophan-tRNA ligase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006436 all species →	Biological Process	tryptophanyl-tRNA aminoacylation	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN22159-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.