Gene detail

Detailed information of ANN22171-RA in Leptoseris scabra

Genomic Location: Scaffold_4__1_contigs__length_45231618:44039173...44064995
NR annotation: CAH3040471.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN22171-RA

ATGACCGATAGAACAGCACCAACCTCATCTTTAAAACTAGAATGGGTCTACGGCTACCGAGGACATCAATGCAGGAACAATCTTTACTATACAAACACGAAAGAAATAGTCTATTTCGTGGCTGGAGTTGGTGTCGTTTACAACACGAGGGAAAACTCACAGCGATTTTTCCTTGGACATAACGATGATATTATCAGTCTTGCATTACATCCAGAGAAGCAGTTGGTAGCCACAGGCCAAGTTGGTAAGGACCCATACATCTGTGTCTGGGACACACGGACATGTCAGACAGTGTCAATCATGAAGGACACCCATCAAAGGGGAGTCACATGTCTAGCATTTAACAACTCTGGGACGCTTCTTGTGTCTGTGGGTTTAGAAGATTATCATCTGATAGCTGTGTGGGACTGGAGAAAGGGACGAGTGCTGGCCTCTGTAAGAGGGCACAGTGATCGAATCTTCGACATTCAGTTCAACCCATATCAAGAAAATGTATTGGTCAGCTGTGGAGTGAAGCATATTAAGTTTTGGACGTTGCGTGGAAATGCACTGAATCCCAAAAAAGGTGTTTTTGGTAAGGCTGGAGAAATTCAAACCAACCTGTGCTTAGCATTTGGTCCTAATGACGTGACTTACTCTGGAACTCTCAGCGGAGAAATTTACAAATGGAAAGGCCACAATCTGGCCGGATCCATTCCAAATGCACATACAGCTGCAATATTCACCATGCATGGAAATAATGATGGTTATGCTACAGGATCCAAAGATGGCACTGTTATTCTGTGGGACAATGATTTCAAACCAATCACTAAACTAGACATGATTCACACCCCTGTTGGTTACGAAGGTCTGTCCGTGCGGAGTACATATTGGACAGGTGAAAAAATCCTTGTTGGTACAAATGCTGGTGAGATATTTGAAGTCCTTGCATCAGAGAAGGACAAACCAAGAACTATTGTACAGGGCCATGCTGAAGGAGAGCTTTGGGCCTTAGCAGTGCACCCCAAAAAACCAATGTTTGCAACCGGCAGTGATGACAAGAGTGTACGTTTATGGAGCATGTCTGACATGACACTACTGGCAAGAACTGATCTTGATCAAAAGGCTCGCTCTTTGGGATTCAGCCCTGATGGCAGTTATTTAGCTGTCGGACTTGGGGATGGATCATTTATGGTTTTAAAAGCTAGAGATCTATCAGAAGTTAGCCACATAAAGGACCGTAAAGAAGTAATTCATGAGTTGAAATACTCTCCGGATGGCCAACACCTTGCAGTTGGATCCAATGACAACTTTGTAGACATCTATTCTGTAGCACAGCGTTACAAGAAAGTGGGAGAATGTAAAGGAAGCTCTAGTTTTATCACACATTTAGATTGGTCTATGGACAGCAAGCACTTGCAAACTAACTCTGGTGCTAGTGAAAGATTGTTCTTCAAGATGCCAAGTGGAAAGAGGATAACAAACAAAGAGGAAATAAAGACAATCCACTGGGCCACATGGACGGGTGTTCTGGGTGTAGAGGTGAACGGTATCTGGGAGAAGTACACAGACACTAATGATGTGAATGCTTGTGATGCAAGCTTCCAGAATGAGGTTTTAGTCACTGGTGATGATTTTGGACTTGTAAAGCTATTTAGATTTCCTTGTCTTAGAAAAGGTGCTAAATTCAGGAAATATGTTGGACATTCAGCTCATGTAACAAATGTCCGTTTTTCTCATGACATGATGAGAGTGATAAGTGTTGGTGGAGGTGATCATGCCATCTTTCAGTGGCGTTTCCTACCTGAGGGTTCCCATGGTGATGATGGTGACGAAGGTGACGGCGGAGCGTATCTGGAGTCCAACAGTGATGACAGTGATTCTGAAGCATCAGACGTTGATGAACTTGATAGTGATATTGAGAATGAGCGTCAGATTGATTACGGAAGGACATTGTATCGTGAAGATTTACCAGCATTGAAAGAGAGAATGAAACTCTCAAAAGGTGAACAGGAAAAGGAAGAGAATGTGCCACGTCAGAAACCTCCCAGTGAAGGATTGAAATTGGAGTTTGTGTTTGGCTACCGAGGATATGATTGTAGGAACAATCTTTTCTACACTCAGAGTGGTGAGGTTGTGTACCATGTGGCTGCTCTGGGGATTGTGTATGATCGTGAGCATCACAAACAGAGATTTTACACTGCACATACAGATGACATCCTCTGTTTGTGTATTCATCCTGTGAGAGATGTGGTGGCCACAGGACAGGTTGGAAGAGACCCAGCCATTCATGTTTGGGATGCTGTGAAGATGGAAACATTAGCTATACTTAAGGGACAACACGAGAGAGGTATCTGTGCTGTGGACTTTTCAGGTGATGGAAAGAAGTTAGTCAGTGTAGGACTTGATGACAATCATGTCATTGTGGTATGGGACTGGAGAAAAGGAGAAAAGCTTGCCACCACCAGGGGTCACAAAGACAAGATATTTGTTGTGAAGTGGGATCCACATAACCAGGACCATCTTGTGACAGCTGGCATGAAACATATCAAGTTCTGGACACAGACGGGAGGTGGCTTCACTTCCAAACGTGGAACATTTGGTGATGCAGGTAAAAATGAGACAATGATGTGTGCAACATATGGAAGAGTTCCTGGTCTGGTGTTCTCTGGAGGTGCCAGTGGCAAAGTGTATGTCTGGCAAGGAAACACATTGAAAAGTACAGTACAAGCACATGAGGGGCCTGTGTTTGCAATGCAAGTCCTCGAAAAGGGTTTTGTAACTGGAGGTAAAGATGGCATTGTGGCACTTTGGGATGAGAACTTTTCTCGCTGTCTGAAGAACTACAAGGTGACGCGAACAGGTTTGAGTCCTGGTCCACCATCTTCTCTTCTGCTTGAAGATGCTCCACCGATCCGTGCAATAACACTTGGACAGGGCAAGATATTAGTTGGAACTAAGAATGGAGAGATAATGGAAATTGATAAGAGTGGACCCATCACTGTACTTGTCCAGGGTCATCTGGAGGGGGAATTATGGGGGCTGGCGTCTCACCCAAAAGATGAAGTCTGTGCAACTGTCAGTGATGATATGACAGTGAGAGTCTGGGATCTAGCTGACCATAGAATGAAGAATGTTCGCAAACTGAAGAAAGCTGCACGGAGCATTGCGTTTTCTCCTGATGGAAGAGCCTTGGCTATTGGTTTTAAAGATGGTAGCTTTCAAGTTGTTGATTCCACCACACTGGATGACATTGTTGGATTTCACCACAGGAAGGAAGAAATCTCAGACATCAAGTTTTCACCTGGGCAAGGTAAATATCTAGCCGTAGCATCACATGACAACTTTGTGGATATCTACAATGTGCTGAGCAGTAAACGAGTTGGAATCTGTAAAGGCAGTTCAAGTTACGTCACACATGTGGACTGGGACTCTAAAGGAAAGCTTCTTCAAACCAACTCAGGGGCTAAGGAGCGTTTGTTTTTTGAGGCACCTAGAGGCACTCGACAGGCAATTGTGTCAAATAAAGCCAAAGAGATAGACTGGTTCACTTGGACGGGTGTTCTTGGTGAAGACTGCACGGGAATCTGGCCGCCACACTCGGACATTACTGATGTAAACAGCGTTGATTTGACGAAGGATAAGACGATTTTAGCGACAGGAGACGATTTTGGATTTGTGAAGGTGTTTGAGTTCCCTGTTAAGAGTAAGAACGCCAAGTTCAAGAAATACGTCGGCCATTCTGCGCATGTTACAAATGTCCGCTGGACAAACGATGACAGGCGCTTAATCTCAGTGGGCGGAGCTGATACGTCAGTCATGGTGTGGTCACATGTTCGGGGGCAAGGTCGGGAAGATGTCGGCGGCGACAGCGATGACTCGGACACAGATTCGGAGGAAGAAGGAGGATATGACAGTGATGTGGAAAGAGAGAAGAACCTGACTTATGAGGACAAGATTTATGCGAATCCTTTACGTACAACTAAAGGAGTAAAACCACATCTCAGAGAAAAACAAGATGACGAGGAACACAGACCCGCTGTTAGTCGTGGCTCTAAAGCTCCGCCTAAAGTTCGACAACTGGACCGGCAAAGAGACTCGGGAAAAAAGAGACGAAACCAGCCTATTCAGGATCTTACTTTAGATTTCATTCATGGCTATCGCGGATTTGACACCAGGAATAATCTTCACTACCTCCCTGAGGGGGAGATTGTGTACCATGCTGCTGGGGCAGGGATTGTACTCAGCACTGCTAATGGAGTCCAGTCTTTCTACCTTGAACACACTGATGACATCATTTGTTTGGCTGTTAATCAACATCCCAAGTTTAAGAACATCGTTGCAACTGGTCAGATTGGTGCAGAGCCGTGTGTGCATGTATGGGACGCCATATCCAAGGAGACGTTATCCGTCATTCAAGGCTTCCATACTAAGGGCGTGTGTGCTGTGAACTTCAGCTGTAATGGAAAGCTTCTTGTCACTGTTGGTATTGATGCTGCTCATGGCATTGCTGTGTGGAAATGGGCTGAAGGAATCAAACTTGCCAGCTCACATGGTCATACGGAGAGGATTTTTGTAGCGGAGTTCAGACCTGATTCGGACAGTCAATTTGTCACGTGTGGTGTTAAACACGTCAAGTTTTGGACGGTGGCTGGTGGGCAGTTGGTTGGCAAGCGAGGGGTGATAAACATGCCTCAGGGGGAGGGGGATGAGTCTCAACTGAGGATGCAAACTATGCTGTCTGTTGCCTTTGGTGCGGAAAACTTGACATTCACGGGCGCCATGAATGGGGATGTGTACGTGTGGTCGAGTCATAAGTTGGTACGGCTGGTGAGTCGTGCGCATGGTGGACCTGTGTTTGCAATGCACACCACCTTACGGGATGGACTGATTGTGACTGGAGGCAAAGAAAAAGGAAATTCCAAGGAAGGTGTAGCCATCAAATTGTGGGATCAAGAAATGAAACGGTGCCGGGCTCTAAGCCTGGGGCCTGGGCCCTGTGTTATACGGTCTGTTTGCAGAGGAAAAGGTAAAATCCTCGTCGGCACAAAAGACAGTGAAATAATTGAGATAACAGAAAAGACCGCAGCACCTATGACCCTTGTCCGTGGCCATGGCGAGGGAGAGATCTGGGGCCTAGCGTGTCATCCTGAGAGAGAAGTGTTTGTTACCGCGAGTGATGATCAGACCGTCAGACTGTGGGACGTGGCCAGTAAGAACATGGTGAAAATGGCTCCCCTGGGCGTGGCAGCTCGGTCAGCGGCCTTCTCTCCCGATGGCGAGTTGCTTGCTGTTGGTCTTAAAAATGGCGCCTTTGTAGTCCTAAAAACCGCTGACCTGAAGATCGTGGCTCAGAAGCGAGATCGTCACAAGGCCATTCAAGACGTCAGGTTCAGTCCAGAAGGTAGATACTTGGCGGTTGGTTCAGACGACAGCTGTGTTGATTTCTATGAGCTCCGTGATGGTCGGCCTCTGACACGAGCTGGCTACTGTAAGGGAATCCCCTCCTTCGTTACTCAAATGGATTTCTCTGCTGATGGCAAGTTCATCCAAGTTTCCACGGGAGCTTATGAGCGGCTGGTGTTTACTGTTCCTGGTGGTAATCCTTTAAAGGACAAAAAAGAAATCAACAGAATAACCTGGGCTTCATGGACCAGTGTCCTCGGTAATGAGGTGGTTGGTGTCTGGCCTCGAAACGCAGACAAAGCTGACGTCAACTGCGCCAATCTTTCGTCCAGCGGTCTCTCCCTCGCTACTGGTGACGACTTTGGTTTTGTAAAGCTGTTCGAATTCCCAGTCACGGAGAAATTCGCCCCTTTCAAGCGATACGTGGGTCACTCCGCTCACGTGACTAACGTGCGATTCACGTGTGATGACCGCTTTCTGATCAGCGCGGGTGGCGATGACTGTTGCGTTTTTGTGCAAGCCCTGAATCCGACAGCTGCTTCACTGGAAGAGCTCAATGACGATGCCACAATAGCTAATCTGGCGCAAGAACTTCCTTTGTATCTTGCTACATCTGATGGGGTCACAGTAACATGTGAGGATGACAAGCTGACTTGGTGGGCAAATCAGAAAGACGCCCTCCCGCACTGGTCTTCGCTAGTTAAAAAACTCCTGTTGATTCCGCCAAGCTCTGCCTCTGCAGAAAGGGTTTTTAGTCTTCTGACCAATGCATTTGGCTCACAGCAAGAGTCCGCCCTCCAAGATTACCTTGAAGCCTCTGTCATGCTTCGATATAACAATGCAAAGAGGGTGTAA

Transcript

ANN22171-RA

Protein

ANN22171-RA

MTDRTAPTSSLKLEWVYGYRGHQCRNNLYYTNTKEIVYFVAGVGVVYNTRENSQRFFLGHNDDIISLALHPEKQLVATGQVGKDPYICVWDTRTCQTVSIMKDTHQRGVTCLAFNNSGTLLVSVGLEDYHLIAVWDWRKGRVLASVRGHSDRIFDIQFNPYQENVLVSCGVKHIKFWTLRGNALNPKKGVFGKAGEIQTNLCLAFGPNDVTYSGTLSGEIYKWKGHNLAGSIPNAHTAAIFTMHGNNDGYATGSKDGTVILWDNDFKPITKLDMIHTPVGYEGLSVRSTYWTGEKILVGTNAGEIFEVLASEKDKPRTIVQGHAEGELWALAVHPKKPMFATGSDDKSVRLWSMSDMTLLARTDLDQKARSLGFSPDGSYLAVGLGDGSFMVLKARDLSEVSHIKDRKEVIHELKYSPDGQHLAVGSNDNFVDIYSVAQRYKKVGECKGSSSFITHLDWSMDSKHLQTNSGASERLFFKMPSGKRITNKEEIKTIHWATWTGVLGVEVNGIWEKYTDTNDVNACDASFQNEVLVTGDDFGLVKLFRFPCLRKGAKFRKYVGHSAHVTNVRFSHDMMRVISVGGGDHAIFQWRFLPEGSHGDDGDEGDGGAYLESNSDDSDSEASDVDELDSDIENERQIDYGRTLYREDLPALKERMKLSKGEQEKEENVPRQKPPSEGLKLEFVFGYRGYDCRNNLFYTQSGEVVYHVAALGIVYDREHHKQRFYTAHTDDILCLCIHPVRDVVATGQVGRDPAIHVWDAVKMETLAILKGQHERGICAVDFSGDGKKLVSVGLDDNHVIVVWDWRKGEKLATTRGHKDKIFVVKWDPHNQDHLVTAGMKHIKFWTQTGGGFTSKRGTFGDAGKNETMMCATYGRVPGLVFSGGASGKVYVWQGNTLKSTVQAHEGPVFAMQVLEKGFVTGGKDGIVALWDENFSRCLKNYKVTRTGLSPGPPSSLLLEDAPPIRAITLGQGKILVGTKNGEIMEIDKSGPITVLVQGHLEGELWGLASHPKDEVCATVSDDMTVRVWDLADHRMKNVRKLKKAARSIAFSPDGRALAIGFKDGSFQVVDSTTLDDIVGFHHRKEEISDIKFSPGQGKYLAVASHDNFVDIYNVLSSKRVGICKGSSSYVTHVDWDSKGKLLQTNSGAKERLFFEAPRGTRQAIVSNKAKEIDWFTWTGVLGEDCTGIWPPHSDITDVNSVDLTKDKTILATGDDFGFVKVFEFPVKSKNAKFKKYVGHSAHVTNVRWTNDDRRLISVGGADTSVMVWSHVRGQGREDVGGDSDDSDTDSEEEGGYDSDVEREKNLTYEDKIYANPLRTTKGVKPHLREKQDDEEHRPAVSRGSKAPPKVRQLDRQRDSGKKRRNQPIQDLTLDFIHGYRGFDTRNNLHYLPEGEIVYHAAGAGIVLSTANGVQSFYLEHTDDIICLAVNQHPKFKNIVATGQIGAEPCVHVWDAISKETLSVIQGFHTKGVCAVNFSCNGKLLVTVGIDAAHGIAVWKWAEGIKLASSHGHTERIFVAEFRPDSDSQFVTCGVKHVKFWTVAGGQLVGKRGVINMPQGEGDESQLRMQTMLSVAFGAENLTFTGAMNGDVYVWSSHKLVRLVSRAHGGPVFAMHTTLRDGLIVTGGKEKGNSKEGVAIKLWDQEMKRCRALSLGPGPCVIRSVCRGKGKILVGTKDSEIIEITEKTAAPMTLVRGHGEGEIWGLACHPEREVFVTASDDQTVRLWDVASKNMVKMAPLGVAARSAAFSPDGELLAVGLKNGAFVVLKTADLKIVAQKRDRHKAIQDVRFSPEGRYLAVGSDDSCVDFYELRDGRPLTRAGYCKGIPSFVTQMDFSADGKFIQVSTGAYERLVFTVPGGNPLKDKKEINRITWASWTSVLGNEVVGVWPRNADKADVNCANLSSSGLSLATGDDFGFVKLFEFPVTEKFAPFKRYVGHSAHVTNVRFTCDDRFLISAGGDDCCVFVQALNPTAASLEELNDDATIANLAQELPLYLATSDGVTVTCEDDKLTWWANQKDALPHWSSLVKKLLLIPPSSASAERVFSLLTNAFGSQQESALQDYLEASVMLRYNNAKRV

Uniprot

Gene family

Uniprot term	Description
Q6ZMW3	Echinoderm microtubule-associated protein-like 6 OS=Homo sapiens OX=9606 GN=EML6 PE=1 SV=2
Q5SQM0	Echinoderm microtubule-associated protein-like 6 OS=Mus musculus OX=10090 GN=Eml6 PE=2 SV=1
Q6ED65	Echinoderm microtubule-associated protein-like 5 OS=Rattus norvegicus OX=10116 GN=Eml5 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05699	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan
PF03451	HELP	HELP motif	Repeat	Interproscan
PF12894	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050630	Family	WD repeat Echinoderm Microtubule-associated Protein-like	Interproscan
IPR008906	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR005108	Conserved_site	HELP motif	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR024977	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13720	WD-40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18598	EML6; echinoderm microtubule-associated protein-like 6	-	Cell motility	-	deepkoala