Gene detail

Detailed information of ANN22190-RA in Leptoseris scabra

Genomic Location: Scaffold_4__1_contigs__length_45231618:44490348...44505261
NR annotation: CAH3016391.1, unnamed protein product, partial [Porites evermanni]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN22190-RA

ATGATGTTTTCAAAAAGTTTACACAAAGAGTTATACGGCCCTTCCCGTATCAGCGCGAACACGGAAATCAAAGACATTCTTTTGCGCGATCATGTATTACAAAAGGGCGAGTGGCATGAAAATCTGCAGCGGAATCCGTGGACAACTTCCTTTGCCACCTCTTTTAAGAAACCTGGCTCAGATGAAAGTGCCCAGCGTGTTAGAGATGTGCGGACAAATATCGCCAATTTTGTGCTGGGATCAGAAGAGGGGCCCTTACTGGCAACTACAGCTAAGGACTTTGATAACAAGCTCCAGGGAGCCCCTGAAAAAGCAGCTCCAAGCCAATCAACAAGCATTGCTGATTTTGCTCCCAAGTACATGTCTGATAAGTCATTTGGCAAATCTGGATCAATTTATGTCAACACATTTGCAAAGAAAGACCAAGGATCACAAGCATCAAGTGCAAAGAACAGAGCTGAATGCCAGCAGCACACTGATGATTTGAATACAACACATTTTCAGCTTGGGACTGATGCCAATATATATGGCACTGAAACAATGTCTTCTTACAAGGACAAGTTAGGATGGTCTCCAGAAAAACCTGGTTCTATTAACTTGGGTTCCAAGGCAGCAGTAGAGACTCATAAATCAAGTGTGTTCAGGAAAGGGGACTGGAATGTAGCTAAGCCACACCTTGTACAGCATTCAGTTACACGCAGTGACTTCCACATTAAACCATTTTCTGCTGGTGCTGATGAATGCAATGGCAAAATGGAGCAAGAAAGAGAGAATGTTGATTCAGAAAAAGAAACAGAACAACCTCCTGTTGCTCCTAAAGATAATCCCAACCATCCTTACTATCAGCGCAGCACCCACTTTGTGCTAGGAACCAACACAGATGAAAGAAACTCATTGTATTTCAAAGATTTCATGCTTGGTAAGCGTGAGTGCTTGTCCAAACCATTGCCAGCTCCACCTCCAATCTCATCTAAGGTTCTTCCAAATCTTGAAGACTGCTTGCCCTTGCGCTCAACAAACACAGCGGATTTTGTGGATCATAAGACTCGAGTCCAGGAAATTGGTCAGAGAAGAACTGCTGAAACAACATTAAATCGGGAACGCCATAATACTGTGGCTGTTGTGTTAACCTGTGATGCAAGACGTCATGCTGGAGACAGGCAAGCATCAATGACAGGTGCTGACTACCTACATCCATCAAACAGCAGTCAATACTTGAGCCCGCAGAAATCCCCAAGAAGTAAATATCGATATTTGGACAGTGATGGAGCCCTGCTCAGAATGCCAGTCTGGCCCAAGCCTTCTGAAACTAAGGAAGAATTTATTCCTATGGATGAGGTAATGACAAATGATCCATCACTGCAGTATAAAGCCAAAAAAGCTGATTGTGAGGGGCGGATACAAGACAATAAAAGCACACATTTTCAGTTTGGTTCAGACAGCGAGCGCAATTGTACTGAACAGCATGACCAGTTCTTGCCTCCTCTTCGTCTTAATCCATCACTTCCTGCTGCTGGTAAGAGTCAAGGCGCTGCACAGAAGAAGTACTCACATGTTTATCCAAGTGAATCAGCTGAACAAGGAAGGCATAGTGTAACTACTTCCTGTCCGTTTGATGAAGTTGCAATGCTTAAGAATCAGCTACAGCAGTTGAGCCAACAAAGGTATTTTAACCCACAGGATCCTATGAATATCAGCTTACGGAAAGCTTTTCTACAGTTTGACACTAGTTTAAGTGGCAGAATTTCCAAAGAAGATCTGAAAAGTGTTCTCAGCAATCTTGGCATCAACATGGAACTCGAAACGTTTGAAAAACTCTTTCAGATGTGCAATAAAAATCAGTCTGGGTATATTGACTATCAAGAATTTGCCAAGCACTTGACAAACGATCTCCATCTCAGTCGAGAAACAAAACCCTCGAGTTCATCAGTAATGAAGGCAGACTACTGTCCACCGGAGCAAAGAAGATTCACGTCTGCTCAGCAGCGCACTATTGAAATGTCGAGGAGGATTGCGCCTTTGTCTGTGAGCTCCCACTACTTTCACAAACATTACACGGGAGCTCCTCGTTTGTCAACCACTGCTCAAGACTTCGTAAGACCCGACAGAATGCCAGGGACCCCAGGTCTCTCGGCTCGATAG

Transcript

ANN22190-RA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005499 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR052603 all species →	Family	EF-hand calcium-binding domain-containing protein 6	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20875 all species →	EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN22190-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.