Genomic Location: Scaffold_18__1_contigs__length_5111168:3191139...3192320
NR annotation: MYC74931.1, NADH-quinone oxidoreductase subunit B [Candidatus Poribacteria bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN22190-RA |
| Transcript |
| ANN22190-RA |
| Protein |
| ANN22190-RA |
| UniProt accession | Description |
|---|---|
| A5GCZ4 | NADH-quinone oxidoreductase subunit B/C/D OS=Geotalea uraniireducens (strain Rf4) OX=351605 GN=nuoBCD PE=3 SV=1 |
| A4SF47 | NADH-quinone oxidoreductase subunit B OS=Chlorobium phaeovibrioides (strain DSM 265 / 1930) OX=290318 GN=nuoB PE=3 SV=1 |
| B3EKA0 | NADH-quinone oxidoreductase subunit B OS=Chlorobium phaeobacteroides (strain BS1) OX=331678 GN=nuoB PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003269 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00329 all species → | Complex1_30kDa | Respiratory-chain NADH dehydrogenase, 30 Kd subunit | Family | Interproscan |
| PF01058 all species → | Oxidored_q6 | NADH ubiquinone oxidoreductase, 20 Kd subunit | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR037232 all species → | Homologous_superfamily | NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily | Interproscan |
| IPR001268 all species → | Domain | NADH:ubiquinone oxidoreductase, 30kDa subunit | Interproscan |
| IPR006138 all species → | Family | NADH-ubiquinone oxidoreductase, 20 Kd subunit | Interproscan |
| IPR010218 all species → | Family | NADH dehydrogenase, subunit C | Interproscan |
| IPR020396 all species → | Conserved_site | NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site | Interproscan |
| IPR006137 all species → | Domain | NADH:ubiquinone oxidoreductase-like, 20kDa subunit | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11995 all species → | NADH DEHYDROGENASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008137 all species → | Molecular Function | NADH dehydrogenase (ubiquinone) activity | Interproscan |
| GO:0048038 all species → | Molecular Function | quinone binding | Interproscan |
| GO:0051539 all species → | Molecular Function | 4 iron, 4 sulfur cluster binding | Interproscan |
| GO:0016651 all species → | Molecular Function | oxidoreductase activity, acting on NAD(P)H | Interproscan |
| GO:0051536 all species → | Molecular Function | iron-sulfur cluster binding | Interproscan |
| GO:0009060 all species → | Biological Process | aerobic respiration | Interproscan |
| GO:0015990 all species → | Biological Process | electron transport coupled proton transport | Interproscan |
| GO:0045272 all species → | Cellular Component | obsolete plasma membrane respiratory chain complex I | Interproscan |
ANN22190-RA.Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
