Detailed information of ANN22225-RA in Leptoseris scabra

Genomic Location: Scaffold_1__1_contigs__length_42512999:55547...76167
NR annotation: XP_020618556.1, leucine--tRNA ligase, cytoplasmic-like isoform X1 [Orbicella faveolata]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9P2J5Leucine--tRNA ligase, cytoplasmic OS=Homo sapiens OX=9606 GN=LARS1 PE=1 SV=2
Q5R614Leucine--tRNA ligase, cytoplasmic OS=Pongo abelii OX=9601 GN=LARS1 PE=2 SV=1
Q8BMJ2Leucine--tRNA ligase, cytoplasmic OS=Mus musculus OX=10090 GN=Lars1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002125 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00133
all species →		tRNA-synt_1tRNA synthetases class I (I, L, M and V)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009008
all species →		Homologous_superfamilyValyl/Leucyl/Isoleucyl-tRNA synthetase, editing domainInterproscan
IPR014729
all species →		Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR002300
all species →		DomainAminoacyl-tRNA synthetase, class IaInterproscan
IPR004493
all species →		FamilyLeucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolicInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45794
all species →		LEUCYL-TRNA SYNTHETASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0002161
all species →		Molecular Functionaminoacyl-tRNA editing activityInterproscan
GO:0006418
all species →		Biological ProcesstRNA aminoacylation for protein translationInterproscan
GO:0000166
all species →		Molecular Functionnucleotide bindingInterproscan
GO:0004812
all species →		Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0004823
all species →		Molecular Functionleucine-tRNA ligase activityInterproscan
GO:0006429
all species →		Biological Processleucyl-tRNA aminoacylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN22225-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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