Gene detail

Detailed information of ANN22314-RA in Leptoseris scabra

Genomic Location: Scaffold_1__1_contigs__length_42512999:1483956...1487764
NR annotation: XP_015749209.1, PREDICTED: uncharacterized protein K02A2.6-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN22314-RA

ATGCCAACCGAGGCTGGTGCGGCGCCGAATCCGGCTCGTAACATCGGAAAAGTTCAGAAGTTCACAGAGGGAGCTGACTTCGAGGCTTATGCAGAACAGCTAAAATTCTTCTTCGTGGCCAATGGAGTGACCAAATCGATACAGAAGAAAGCTGTCCTGTTAACTAACCTTCCCACTGAAACGTACCAACTGGCGAAAGACTTGATGGCCCCGATATTGTTAAGAGAAGACTCTCTCACGCTCAGAGATAGATTGGTTTCGGTTATTCGAGATAAGAGAATTATGTCAGAGCTTTTAAAACTCAAACTCGAGGAACTGACATTTGATATTGCTGTAGCGAAGTGCATCGCTATTGAGCAATCTTACAAGGATGTTGAAGCTCTCCAGGGGGGTAAAGAGTCAAACCCAGTCGATTTGTTATCCAAGTCTAGACCACGCAAGAAGCCTAAACCTAAGGGAGAAGCTAAGCCTTCAGAGAAAAAGGGTTCCCCATCCTCTAAAGAGCCGGGTGCTACCGCTGTTGGAAATCATGATCATAAAAGCTGTCCATTCAAAAAGGAAAAATGTCACCACTGTAACAAGAACGACCATATTGCAAGGACTTGTAAATCCAAGAAAAGGGAGACACAAGCTGTCCATCCCCCAGTAAATTATGTGGACAGTGATGACGGGGACAGCGATGTTTATTTGGGGTCCTTAGAGGTTTATAATGTGAGCGACGAAGATCATGTCATTTGGGTCAGCCCCGAAGTAAAGGGAAGGGTGGTCAAGAGGGAATTAGACACAGAAATTTGGAAACGTGCCATAGATCAGGTATTACAGGAAAACCCTGTCATCCAGTGTATCCTCGATGACATTATCGTTTCGGGGAAAACTGATGAAGAGCATTTGGAGAACCTAGAGAGCGTGCTCAAGGGACTACAAGACGCGGCCCTGAAGGCCAACAAGGAGAAGTGTGAGTTCTTCATGGATAGAGTTCATTCTCCAGCCACTTCATCAGTTGTTAGAGCAAACCAGTGGACTGAACAGTGCGAGCAAGACTCCACCGAGGCTAAGCGCATGATTACATCGGAGCAGGTGCTAACGCATTATGATCCAGTGTTAGCTGTTAGGCTTACATGTGACTCTTCACCAACCGGCATCAGTGCGGTTCTTTTACACGTCATGCCTGATGGCAGGGAAAGGCCGGTAGCTTTTCAGAAAGAGCTTGAAGAGATGGGAGTGGATTCGTCAGAGGTGTTCCACGCAACCCAGTTTGTGCCACTACCTGTAACTAGTGAAGCAGTTGCCAGAGAAGCACGTCGTGACCCAGTCCTGGCAAGGGTGCACGAGTCTATTGTGAAAAGCAAGTGGCCGGAAGTGATTCCGGTTAGTTCCAGCACTTCAAGTTCAACCATCGAAGTCCCACGCGATGTGTTCGCCAGATTCCGAATTCCTGAGCAGATCGTTAGTGACAATGGTGCACAATTTGTTTCTGGGGAGTTCCATGCGTTCGTCAGGTCCAATGGCATCCGCCATATTACATCAGCACCATACCATCCAGCTACAAACGGTCTAGCGGAGAGGGCAGTACAAACGTTCAAGCAGGCATTACGTTCCATGCATCAAAGCTCAAAGCCAGTGAAGGAGAAGTTGGCAAAGTTCCTCATAGCTTATGGAAACACTCCTCACTCCACTACTGGTGTGAAACCGGCACAGTTATTCCTTGGAAGACCGTTGCGCACTCGCCTCGATTTGGTGAAACCCAACTTGAACCGTAAGATGGTTAACCAACAGCACCAGCAGAGCATCAGGGCCACGAATGAGAAGGGTAGACAGCGTCGTCAGTTAGAGGTTTGGGACTCGGTGATTTCACGCAATTATCGAGGGGATCTGAATTGGCGTTCTGGGCTGATTGTCAGCAAGGCAGGTCCGCTGATGTACGAGGTGCAGGTGGCACCAGGGATTGTTTGGCGTCGTCATATTGAGCACACTGTTGAGGTCACTGACGCCGACGCTACCGGTCGGCGGAGCTGA

Transcript

ANN22314-RA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan