Gene detail

Detailed information of ANN22316-RA in Leptoseris scabra

Genomic Location: Scaffold_1__1_contigs__length_42512999:1492292...1512964
NR annotation: MCT4602693.1, reverse transcriptase domain-containing protein [Marinifilum sp.]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN22316-RA

ATGGAAACATTTGTTACCGCTCGTTCGCGGCGATGTTTGGCACTAGTTGAAATTAGTACACCTGGACTTGTGCTCACCGCTTTAGCATGGACAGTTGGCGTCACATTTAAACCGATATCATCTCGTTTCATTCTTGGGATGATTGGCTTGCTACTTACTTCATCAATCAGAAATCAGAATCGATGCATGAAGTCGTCGTTCGTGAAGTGCTTGGAGCATATTGACGAGTTTCCGCACAAAGTGACGTTGCTGGAGATTCCAGAGCTTCTGGTAGCAATGAGGGACAACAAGACAGCAAAGGAGCAGAAGGTGGACCTCAGAGGAAACATTCACTACAAAAGATTCAGACAAAAGTGTATAAAGTATTTTACATGTAAATGTAAATTGCGAGGATCTGAAAGCAAGCGAGAAACATGTCGAATACATCTGCAGCCTGAGGAAAATGGAAGCAAAAAGAGGTTCTTAGCAACCATCCCAAAGATTGAGGGAAGAGGTTCTTTACCGCTGTGTCCCGTTCTGCTCGTGTTCGGTCAATGTTATGCCAGTGTCAGGTTGAAATGTCTGGCCGAATTTATGCTCCCGTTTGGTCAGACATTTTCGTACGGAGAGGATGAAGATGAAACACATGAGCCAATCAAGATTGACAAGCACCCTAAATCACAAACAGCAAAAGAAGGATCAAAAGTCGAATTCAGATGCAAAGTGCAAGGAAAGAGCACAAAGTTATTGTATCGGTGGTTTAAAGATGGCGAAGCTATGCTTAATCAAAATCAACCCAGTCTTGTTTTGGATTCTGTTGAACTGAGGGATTTTGGCCACTACATGTGTCGTGTGAGTTATCAGGATTTGAATGGTGGAGGGGTGAAATCTTCCTCAGCAAAACTGGATGTCACTCCACAGTGTCGAAATGGAAATAGACCCAAACTCTTGGCAGACGTAGACATTTGTACCAGAGATAAAATCGCCCTACTGATCGAAAACAAGAGATATAGTTTGGGAGGGTGCAGAGAAGTAGCTGCCGAATATGGTATGGAAGACCACAAAATAGGAGCTCTGAGCAATTCCAAGGAACCTGGAAAAGATGTCATGGAATTTCTAATGGGATCCAGGCCCAACTTGACTGTTTATGATTTCTGTAAATTTTTAAAAGAGAACGAAATGAGGAGGCTTGATGTGGTAAAAATCCTCGAGGATCACTTTTTGGTTCGAGAGGGAAGCGAAAAATGGTTCTCGGTCTTATACGATGACGTGGAGTCTGCGGCGATGAACGCCGGCTTCTTGTCAAATTATTTTAAAGTCGCAAGAGGAGTACGGCAGGGTTGTCCACTAAGCCCCCTCCTGTTTATTCTTGCGGTAGAAATATTAGCATGTAAAATTCGTCAAGATCCAAGCTGCAAAGGTATCATCCTCCCAAATCGACAGGAAGCTAAAATCGCTCAATTTGCGGACGATACAACTCTTATCGTTCGGGATGCTACTTCTCTTAGTTGTTTTCTTCATAATATTGAAATGTTTGATAATATCTCAGGTCTTAAATTGAATCGTACAAAACCTAAAGCAATGACGTCGATCGGCTCTTTAAAAGGTAAAAATTCCAAGATCCTGAACTTCTCCTGTACCAAGGATCCAATAAAATCACTCGGAGCATATCACTCCTACAACGAGGATAAAAATAATGAAGAAAATTTCTTTAATAAGATCCGTAAAATGAAAACCAAATTGAACCTTTGGTTGACGCGAGACCTTACACTTTATGGCAGAACTCTGCTTGCGAAAACAATTGGTATTTCCCAGTTAATATATACAGCATCCATGCTTACCGTTCCAGAATCAGTAATTAAGAACACCCAGGCCATTCTATCTTCTTTCTTGTGGAAAAGCAAGAAAGATAAAGTGAAAAGGCAGGTGATCTACCAGCCACTCTCAGAAGGAGGTCGCAACTTCCCGAATTTTAAGACCATGATCCAATCGTTACGTTTAGCATGGCTAAGTAGACTATTAAGTGGAACAAAGGATACATGGAAGGCTATCCCTAATTACTATTTCAATAAACATGGAGGGCTGGCATTTCTTCTTAATTGCAATTACGATGTTGCAAAAATTGCTCAAAAACTGTCCCGCTTTTATCGTGAACTCCTAGAATATTTTAACGATGTGAAGAAAAATAGTTTTCAAGATAAAAATAGTAAATTTATCCTGTGGAATAATCAAAACATTACAATTGATGGCAACTTAGTGTTTTGGAAATCATGGTTCGACAGCAATGTCATACGTATTCATGATCTTTTAAATTCGGAAGGGAATTTTCTTTCTCTTGATGAATTTCAAAGAAAGTTTAACCTCAAGTTAATGAAGAATAAGCCACCGAAGCGTTCCAGGAGTGCAGTTTTGCGTCATGATTCGTTTATTTCTCCTAATCTAAAAATCTCAGAGGACGTAAGTTTAGATCTCATGAACTTACGTTGTAAAAACTATTATAAATTAATTACTGAGAAATCTACTGCTGTCCCAACTTCTATTAAGACTTGGGAGAAACAATTTCCGGTGATTTCTGATAATTGGCAAAAAGGTTTTAGCTACATTTATGCCGCGTCTAAAGATAATAAATTAAGACAAATAATTACGACTAGAAAAGAGTTGAAAAGATATAAATTGTCTGATGACGATCTCTGTCCTCGATGTTCTAATCCCGATTCCATCGAGCACACTTTCATTAATTGTCCTGATTCCACATCCTTACACTTGAGTGGTTCAATAGAATTGAACGAATGCAGCAGACAGATTTGTGCAACTGACCATTACACTGTTTTTTGGTCAAATGGCAGTTTTAAAGATTGTTTGAAGTGTGATAAATGCCATACTGGTTTTGGACTGGATCCCAAATGTGGTAGCATTAGATGTGTACCATGTGTCAATGGTAAAACATTCTCCAATGACTATGACTCAGCGCCCTGTATTTCCTGTCATGGGTGCGCAAAGCATGAGATAGTGGCAGCAAACTGTACTAGAAGCTCAGATACAAAATGCAATGGAACTTGTATCCAGGGTTATTACTACACCAAGAAACCACGGCATGACTGTCTGAGGTGTGCATGCTGTTGTTTTGACGGAAAAGATGAAATACAATAG

Transcript

ANN22316-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P08548	LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1
O00370	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1
P11369	LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000593 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR001368 all species →	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31635 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN22316-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.