Gene detail

Detailed information of ANN22411-RA in Leptoseris scabra

Genomic Location: Scaffold_1__1_contigs__length_42512999:3135806...3169641
NR annotation: CAH3126967.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN22411-RA

ATGGCGGAGAAACACAGCGCGCGGAAAAACTGGCGATGCACTTTAGAACGAGCAGAGAAGTTTATTTCTCCGCTCTATTTTTCTGATATTAATTTATTCAGCAGGTTATATCCCAAGAAACTCCCATTGAGCTCTCTTACCCATTATGCTGCCCCTGGTCGAATCACGTACAATGAGGCCATCAGTGGCAAGTTTGTTGAAACTCAAGTTGGGCACAGTTTCGGTCCAACGTGGTCGACACATTGGTTCAGAGTTGATATTGATGTTCCAGAGGACTGGAGAGGTGAAGAAGTGCATTTTAGATGGAACTCTTCATCAGAAGCCATGGTGTGGAAAGATGGAAAACCAAGACAGGGTTTGACAGGCGCCAATGGACATCAACAGAGAACAGATTACGTGCTCTCAACTAATGCCATTCCTGGCAGGTATACACTGTACGTGGAGATGGCTGCCAATGGCATGTTCGGTGCAGGAAAGGAAGGCTTGATCAATGCACCCGACCCCTCACGGGAATACACTCTATCCATGGCTGAAGTGGCTGTGTTTAATACTCAATGTTATCAAGTGTTAATGGATCTAACTGTGATTATAGACCTGGCAAAGAACCTCTCACAAGAAAGCCCGAGAGCCTTTCAAGCTCTTTATACTGCAAATGATATTGTGAATGCATGTCAGGATTTATCAGACAGGACAGCATTGCAGAGGGCTCACGAGATTGCCTCAAGATTCTTCAAACAAAGAAACGGAGACTCTCAGCACCAGATCCACGCGGTTGGAAACTGTCATATCGACACTGCCTGGTTGTGGCCTGTTGCTGAGACTGTGAGGAAGTGTGGTCGAAGTTTTGCCACAGCTGTTAGACTGATGGAGACATACCCTGACTTCAAGTTTGTTTGCTCACAGGCGCAACAGCTTGAGTGGGTTAAGCTTCATTACCCAGCCCTGTTTGATGAGATCAAGATGTTTGCTGCTAAGGGACAGTTCATACCTGTGGGTGGAACATGGGTAGAGATGGACGGCAATATGCCCAGTGGCGAGTCTTTCATTCGCCAGTTTTTAGTTGGACAGAACTTCTTTCAGACAGAATTTGGCAAAGTTTGTCAAGAGTTCTGGCTGCCAGACACATTTGGTTACTCGGCCCAGCTTCCCCAGATCATTCGTGGAGTGGGAATGAAGTACTTTTTGACCATGAAACTAAGCTGGAGTCTTTTCAATAAATTTCCATTTCACACCTTCTTTTGGGAGGGAATTGATGGATCGAGATGTCTTGCTCACTTTCCGCCAGCTGACACATACGAGTCACGTGGAGACGCTAAAGATGTCTTAAAGACAGTCAAACAGCTGAAAGACAAAGGACGAGTCCACGCCAGTATGTTGCTATATGGCCACGGAGACGGTGGAGGCGGACCTTCAGAAAACATGCTTGAAATGTTGAAGCGGATGGAGGATGTAGATGGCTGTCCGAGGGTTAAACTGTCCGAACCGCAAGATTTTTTCCACTCCCTTGAGTCACGTGATGCCGATAAGCTGTGCACATGGGTTGGTGAGCTTTACCTGGAGCTACATCAAGGAACATACACCACGCATGCGCGGATAAAACAAGGCAACCGTCAAAGTGAGTTTCTTCTTCATGACGCTGAACTCCTGTCGACTTTGGCTTTTATTTTAGGAGACAAGAATCCAGAAAAGTATCCCTCGGAGGAATTTCTTAGAATCTGGAAACTCGTGCTGTTAAATCAGTTTCATGACATTTTACCAGGAAGCTGTATAAAACAGGCTGCTGATGATGCTCTACAAAGCTATGAAGACGTCCTGAAAAGTACTCGACGAATATTGGATGCAAGCTGCTCCAAGGTTATTTCTCAGCTTAACTCTGGTATGAAGGATCACGTGACCAAACCCGTCCTTGTAAACACCCTCTGCTGGCAGAGAACTGAAGTTGTCGCTATCCCTGGTGAATTGTGGGACGGTTTATCCGTAGAAGAAAAATCCTCAGTAAACAAGCAAAGTACAAAGGACGGAAAAACTCTAAGTCTAGTTTCAGTTCCAAGCTTGAGTATTAGCAACTTAGTTCATTCACAAAGTGAATTCCACCCCGTGTCTCTTTCAGCTGACCAGCTGCAAGGATCAGTTGTTTTGGAGAACGCCTTCATCCGAGCTGAATTGGTTAGAGGGGGCCTGGTGCGAAGTCTTGTTCACAAGGCAAGCGGCAGGGAGGCGATCAGTCCTGGTTATTCTGGAAACCAGTTTATCCTGTTTGACGACGTTCCATTATTTTGGGATGCCTGGGATGTAATGCCTTATTACCTGGAAACAAGGAAACTGTTACTTCCCACATCTTCTGAGGAATTCAAGATCCTTGAAGAAGGACCACTGAGGGTCTCAGTGGAGTATTCCTTGAGAATCAGCGAGCACAGCTGTCTCAAGCAAGTCGTGTCTTTGGATGCCGCTGTTCCGTATGTCAAATTTCACACCAAGGTTGATTGGCACGAGAACCGTAAGTTTCTTAAGGTTGAATTTCCAGTCGATGTTCGCTCGATGAGCGCAACTTACGAAATACAGTTTGGTCACCTGCAGCGGCCCACACACTGTAACACCACGTGGGACTGGGCCAAGTATGAGGTGTGTGGTCACAAGTGGGCAGATCTGTCCGAGCACGACTGGGGCGTAGCACTAATGACTGACTGCAAATACGGTTACTCAACTCACGCCAACGTCATGTACATCTCACTACTTCGCTCTCCCAAGGCCCCGGATGAGGAGGCAGATATGGGGTCACACGAGTTCTCATACGCCGTTCTTCCCCACTCAGGTACTTTCCAAAGTGCAGGCGTCATTCAACATGCGTACAATTTCAACCAGCCCATCTCCGTCGTACCGGGCTGCATTTCTAAAGACTTCAAAGGGAAGTCTTTCTTTAGCATGGATAACCCCGCAGTGATACTTGAGACGGTGAAAAAAGCCGAGTCCATTCCATCGGCAGCGGTCGTTCGACTTTATGAAGCATTCGGAAGTCACGCTCGCATCAGACTCTCTACTAGCCTCCCGGTCAAGAAAGTCACAAAGTGCAATCTTCTGGAGATCCCGGATGAAGATGGTGACGTCACGTGGTCGTCTGGTCACGTGGAACTTAGTTTACGGCCTTTTCAAATAACTACACTGTTATTTTACTTTTAA

Transcript

ANN22411-RA

Protein

Uniprot

Uniprot term	Description
Q9NTJ4	Alpha-mannosidase 2C1 OS=Homo sapiens OX=9606 GN=MAN2C1 PE=1 SV=1
Q91W89	Alpha-mannosidase 2C1 OS=Mus musculus OX=10090 GN=Man2c1 PE=1 SV=1
P21139	Alpha-mannosidase 2C1 OS=Rattus norvegicus OX=10116 GN=Man2c1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09261	Alpha-mann_mid	Alpha mannosidase middle domain	Domain	Interproscan
PF17677	Glyco_hydro38C2	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	Domain	Interproscan
PF01074	Glyco_hydro_38N	Glycosyl hydrolases family 38 N-terminal domain	Domain	Interproscan
PF07748	Glyco_hydro_38C	Glycosyl hydrolases family 38 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015341	Domain	Glycoside hydrolase family 38, central domain	Interproscan
IPR028995	Homologous_superfamily	Glycoside hydrolase families 57/38, central domain superfamily	Interproscan
IPR027291	Homologous_superfamily	Glycoside hydrolase 38, N-terminal domain superfamily	Interproscan
IPR041147	Domain	Glycosyl hydrolases family 38, C-terminal beta sandwich domain	Interproscan
IPR037094	Homologous_superfamily	Glycoside hydrolase family 38, central domain superfamily	Interproscan
IPR000602	Domain	Glycoside hydrolase family 38, N-terminal domain	Interproscan
IPR011013	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan
IPR011682	Domain	Glycosyl hydrolase family 38, C-terminal	Interproscan
IPR011330	Homologous_superfamily	Glycoside hydrolase/deacetylase, beta/alpha-barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46017	ALPHA-MANNOSIDASE 2C1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004559	Molecular Function	alpha-mannosidase activity	Interproscan
GO:0006013	Biological Process	mannose metabolic process	Interproscan
GO:0009313	Biological Process	oligosaccharide catabolic process	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0030246	Molecular Function	carbohydrate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01191	MAN2C1; alpha-mannosidase	EC:3.2.1.24	Membrane trafficking	ko04131	deepkoala