Genomic Location: Scaffold_27__1_contigs__length_2138198:2017557...2022154
NR annotation: WP_183911215.1, glucose-6-phosphate isomerase [Simiduia aestuariiviva]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN22475-RA |
| Transcript |
| ANN22475-RA |
| Protein |
| ANN22475-RA |
| UniProt accession | Description |
|---|---|
| A6W2I5 | Glucose-6-phosphate isomerase OS=Marinomonas sp. (strain MWYL1) OX=400668 GN=pgi PE=3 SV=1 |
| Q2S8W1 | Glucose-6-phosphate isomerase OS=Hahella chejuensis (strain KCTC 2396) OX=349521 GN=pgi PE=3 SV=1 |
| C3K249 | Glucose-6-phosphate isomerase OS=Pseudomonas fluorescens (strain SBW25) OX=216595 GN=pgi PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004021 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00480 all species → | ROK | ROK family | Family | Interproscan |
| PF00342 all species → | PGI | Phosphoglucose isomerase | Domain | Interproscan |
| PF00990 all species → | GGDEF | Diguanylate cyclase, GGDEF domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR035482 all species → | Domain | Phosphoglucose isomerase, SIS domain 2 | Interproscan |
| IPR029787 all species → | Homologous_superfamily | Nucleotide cyclase | Interproscan |
| IPR046348 all species → | Homologous_superfamily | SIS domain superfamily | Interproscan |
| IPR000600 all species → | Family | ROK family | Interproscan |
| IPR001672 all species → | Family | Phosphoglucose isomerase (PGI) | Interproscan |
| IPR043129 all species → | Homologous_superfamily | ATPase, nucleotide binding domain | Interproscan |
| IPR000160 all species → | Domain | GGDEF domain | Interproscan |
| IPR049874 all species → | Conserved_site | ROK, conserved site | Interproscan |
| IPR043128 all species → | Homologous_superfamily | Reverse transcriptase/Diguanylate cyclase domain | Interproscan |
| IPR023096 all species → | Homologous_superfamily | Phosphoglucose isomerase, C-terminal | Interproscan |
| IPR018189 all species → | Conserved_site | Phosphoglucose isomerase, conserved site | Interproscan |
| IPR035476 all species → | Domain | Phosphoglucose isomerase, SIS domain 1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11469 all species → | GLUCOSE-6-PHOSPHATE ISOMERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0097367 all species → | Molecular Function | carbohydrate derivative binding | Interproscan |
| GO:1901135 all species → | Biological Process | carbohydrate derivative metabolic process | Interproscan |
| GO:0004347 all species → | Molecular Function | glucose-6-phosphate isomerase activity | Interproscan |
| GO:0006094 all species → | Biological Process | gluconeogenesis | Interproscan |
| GO:0006096 all species → | Biological Process | glycolytic process | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0048029 all species → | Molecular Function | monosaccharide binding | Interproscan |
| GO:0051156 all species → | Biological Process | glucose 6-phosphate metabolic process | Interproscan |
ANN22475-RA.Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
