Gene detail

Detailed information of ANN22496-RA in Leptoseris scabra

Genomic Location: Scaffold_1__1_contigs__length_42512999:4878261...4901288
NR annotation: CAH3173143.1, unnamed protein product [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN22496-RA

ATGGCGTCCAAAAGGCCAAAGTTAGACTGTAGCGAACATGGAGAATTTGAAAGTGACACGGTGGAAAGACTAGAAAAAAACTGTACGGAAACGCTTATTTATATTGTACCGAAAAAGATCCCAAAAGCTAGACTTCAAGTGTTGAACAATCTCGCTCGAAAGAAAGGATTTCCCATAACAGACCATTTCAGGGATTCAGTGACTCACATTGTCACAGCCTATGAATCTAGAGAGAGGGTTCTCGCTTTCTTAGAAAGGTACAAAGATGAAGGGTTGACTAACTGTACAGCAGCAGGGAAGATCCTGGACGTTCCAGATGAAGTGAGAGTTCCATCTACAGCAACATCAACAAAAGAAATTTCTGGAGATGGTGAAAGTCAAGACACAACCAAAGAAACTGCAGTTCTTGATTATCAGGACACCAAGTATGTTTGTCAAAGAGCAACTCCTTTGAAGCACCACAATAACAAATTCACAGATGCTCTTGAGGTGCTTGAGCGTCATGCAGTGTATGTGGACAGTGGTCAGAGAGATTCCAGAGCGCTTGCTTTCAGAAGAGCAGCCTGTGCACTCAAGTCTTACCCAAAACAGATCAGTAGAATTGAAGAGGCAGCCAAGCTAAGCAATGTGGGGAATCATAGCAAGAAAGATATTCTGGAAAATGGCTCATCCACTGAAGTTCAAGACATCATTTCTAGTGACTTTTTCAAGTCTATGGAGATATTCTCATCTGTTTATGGATGTGGACCAGCTACAGGTCGAAAGTGGTACGACAAAGGTTATCGAAACATGGCTGACATCACCCAGGCAGTGTCAGATGGCATGAAACTCACAGAACAGCAGGCAATGGGCATGAAGTACTACAATGATTTGAATCAACCTGTTCCTAGAGAAGAAGCCATTTTTATCAAGGACATTGTTGCTCAGGAGTTAAACAGTATTCAGCCCAACTGTACTGTGGAACTAGTTGGAGGGTATCGCAGGAGCGTTCAAAGTCACTGCCACGGACTTCGGCTACAGTGTTACAATAGCAATAGCTCCAGTTCTCCCGAAGATGAGTGTTTAACCGAAAGAGAATTTCGATGTGTGTACTTAGTTACCTATAGTCAGGCGGATGTGGCGAAATTTCCAAATCGTGAAGTCTTTGCGCGTGCTATCGTGGAGTCCTTTTCAACGGGCACGGCAAAAGTCGTTCAGTGGGTGTTATTAAATCCACTAAAAGTCATCTATCGCACTTTCTGCAATCCAGCAACAGGTACGTTTGCTTGGGTGGGCGTTGAAAATGCGGAATGTATCCTCTTAAATGACTTAAGTTGGTCAGCGCAAATTATCCCGTGGCACGATGTATTGTTGATGTTAGAAGGCGATGTAGTCCATTTGCCCGCGCCAAAGACCCATTATTCTACCGACATCTGTTTGCAAAGAGACACTCCCGTCTTTGCCACAGGGAAAGGCCCCCTAATCTATGTCAAGAACGGAGTAATTGACCAACAAGAAACGGATATGATGTCCTCAAGGTGGAGAATTTTGAAGCTGCATCATCAAGTTCCACGCGAGGCGCAGCGGGAAATACCGCCCTGCCGAAAGAGCGTTCAAAGTCACTGCCACGGACTTCGGCTACAGTGTTACAATAGCAATAGCTCCAGTTCTCCCGAAGATGAGTGTTTAACCGAAAGAGAATTTCGATGTGTGTACTTAGTTACCTATAGTCAGGCGGATGTGGCGAAATTTCCAAATCGTGAAGTCTTTGCGCGTGCTATCGTGGAGTCCTTTTCAACGGGCACGGCAAAAGTCGTTCAGTGGGTGTTATTAAATCCACTAAAAGTCATCTATCGCACTTTCTGCAATCCAGCAACAGGTACGTTTGCTTGGGTGGGCGTTGAAAATGCGGAATGTATCCTCTTAAATGACTTAAGTTGGTCAGCGCAAATTATCCCGTGGCACGATGTATTGTTGATGTTAGAAGGCGATGTAGTCCATTTGCCCGCGCCAAAGACCCATTATTCTACCGACATCTGTTTGCAAAGAGACACTCCCGTCTTTGCCACAGGGAAAGGCCCCCTAATCTATGTCAAGAACGGAGTAATTGACCAACAAGAAACGGATATGATGTCCTCAAGGTGGAGAATTTTGAAGCTGCATCATCAAGTTCCACGCAAGGCGCAGCGGGAAATACCGCCCTGCCGAAAAGGTAAACCTTCTGGACATGATGTAGACATACTAATAACACACAAGGAGGATAACAGAGTGCAAGGATTGTTAGTGAAGCTGGTAGAAAGACTTGACAAGCTGGGTCACATGCTCCACAAGGATGTGATGGTTGGCCGCAACCCACACTTTGATGGCAGCCAAAAACAGGGAGGAGGTCAAATGGATCATCTTGATCATTGCTTCTGCATGTTTCAAGTAACAACTGCAACAGCAGCAGCAACAACAGAGAATGAGTCCAACGTGATTACAACTGAGAAAACAGGTTTAAATACCACCTCATGCTCAGAAGAAAGGGGAGGAGCAGTGAGGAGAGTGGATCTGATTGTGACTCCACATAAACAATTCCCATTTGCTCTGCTGGGATGGACAGGCTCAAAGCCTCCTTGCCAAATAGAAGCAAGAACAGAACAAGAAATATTTGCTGCACTGAGACTGGAATACAGAGAACCACAAGACCGAAATGCATAA

Transcript

ANN22496-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O02789	DNA nucleotidylexotransferase OS=Monodelphis domestica OX=13616 GN=DNTT PE=2 SV=1
P42118	DNA nucleotidylexotransferase OS=Xenopus laevis OX=8355 GN=dntt PE=2 SV=1
O57486	DNA nucleotidylexotransferase OS=Ambystoma mexicanum OX=8296 GN=DNTT PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009412 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14716 all species →	HHH_8	Helix-hairpin-helix domain	Domain	Interproscan
PF10391 all species →	DNA_pol_lambd_f	Fingers domain of DNA polymerase lambda	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037160 all species →	Homologous_superfamily	DNA polymerase, thumb domain superfamily	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR010996 all species →	Domain	DNA polymerase beta-like, N-terminal domain	Interproscan
IPR043519 all species →	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR027421 all species →	Homologous_superfamily	DNA polymerase lambda lyase domain superfamily	Interproscan
IPR002054 all species →	Domain	DNA-directed DNA polymerase X	Interproscan
IPR001726 all species →	Family	DNA nucleotidylexotransferase (TdT) / DNA-directed DNA/RNA polymerase mu	Interproscan
IPR018944 all species →	Domain	DNA polymerase lambda, fingers domain	Interproscan
IPR022312 all species →	Family	DNA polymerase family X	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11276 all species →	DNA POLYMERASE TYPE-X FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0034061 all species →	Molecular Function	DNA polymerase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006303 all species →	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN22496-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.