Gene detail

Detailed information of ANN22560-RA in Leptoseris scabra

Genomic Location: Scaffold_1__1_contigs__length_42512999:6005241...6014216
NR annotation: XP_027036503.1, malignant T-cell-amplified sequence 1-like [Pocillopora damicornis]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DER1	Malignant T-cell-amplified sequence 1 OS=Xenopus tropicalis OX=8364 GN=mcts1 PE=2 SV=1
Q5PPY1	Malignant T-cell-amplified sequence 1-A OS=Xenopus laevis OX=8355 GN=mcts1-a PE=2 SV=1
Q6NRJ7	Malignant T-cell-amplified sequence 1-B OS=Xenopus laevis OX=8355 GN=mcts1-b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008457 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17832 all species →	Pre-PUA	Pre-PUA-like domain	Domain	Interproscan
PF01472 all species →	PUA	PUA domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016437 all species →	Family	MCT-1/Tma20	Interproscan
IPR002478 all species →	Domain	PUA domain	Interproscan
IPR004521 all species →	Domain	Uncharacterised domain CHP00451	Interproscan
IPR041366 all species →	Domain	Pre-PUA domain	Interproscan
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22798 all species →	MCT-1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0001731 all species →	Biological Process	formation of translation preinitiation complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07575	MCTS, TMA20; malignant T-cell-amplified sequence	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.