Gene detail

Detailed information of ANN22609-RA in Leptoseris scabra

Genomic Location: Scaffold_1__1_contigs__length_42512999:7016098...7051022
NR annotation: CAH3179392.1, unnamed protein product [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN22609-RA

ATGGCGGTCAAGTTTGTCGTCAATTTTTGTTCCGTTTGTGGTCTTATCCTTCTCTCCAGCAGTAGCATTAGCGGAATAAATATTACCAGTGAGATGGTACGACAGTGGGCAGATCGCATCGGAACAGAGGCCTCTGAATTGACAGAAAATTTAACTGGCACCAAAGAATTAACGCAGGCGTACGAAAATCCGGAAAATTTGACGTTTTCGACAGAGGACGTCGACTGGACTGAAGTTCTCGAGAGAATGAAGACAGAAATGAAGGTTTTCTTCAGCAGCAAGGCGTCGTCATTAAAGAAATTAGTAGATCAGGCAGAGGATGCTTACTGCAAGTACAAGTATAACAAAAATTTAAAGCTCAGTGACATAGACTATCCAAATGCAAAACATTTGGATGAGTATTTAAACAAGACTGGCCTGTCGCTGGAATACAATTCCACCTTCCAAAGTGAAATCAGCTTTAATAGGAGTGTGATACATGTCCCAACTGATGTGTATGATGGAGCTGCAGAGATTGTAAATGGAATCAGTTGGACCTCAGCACTCGATGATATATTTGACAAGAACAGGCATGATGACCCCTCTTTGTCCTGGCAGTATTTTGGTTCAGATAAAGGTTTCATGAGAACATATCCTGCTAAACGCTGGGATGATAACCCAAGTCAAGTAGATTTATTTGATGCAAGAAGAAGACCGTGGTATATTCAAGGAGCAACTTCCCCGAAGAACATCATTATCCTTATTGATGCAAGTGGAAGCATGCATGGTGTGCCCATGAGGATAGCAAAATTATCTGCACAGAATCTCATTGACACTTTTGGAGACAACGACTTCTTCAATGTGGTCTATTTTAGTAATGTTGCTCATGTGCTGTGCTGCTCTGACACTGGTCCCACATTGCTACAAGCCACCAAGAAAAATAAGATTTATGTCAAAAGCAAATTGCAAGACATAAAAGATGGTGATGTTGCTGTGTGGAAACATGGGATTAACAAAGCCTTTGAACTTTTAAGAAAGGCCAATAACTGTGCACTGTGCCAGCAGGCCATCATGGTACTTAGTGATGGGACAACTGCAAGTTTGTCAGACCTGTTTAAAGAAAATAATCCAGACAAAAAGGTTCGTGTCTTTACATTTGCTGTGGGGCCCCCTGCTGAGAGCACCCAGGCATTACGAGAAATGGCCTGCAACAATAGAGGTTACTTTTCACGTATTCAAAGTGTTGGAGCCGTTCGAGAAGTTAGTGAGGATTACATCCGTGTACTGACCAGACCAATGGCAATGGCCCCTAAAGAAAATACAACGGACAATACAGTATGGACAAGTGTTTATTTAGATGCCTTGGGACTAGGCATGATGGTAACTGGAACCTTGCCTGTGTTTCATCGCATCAAAAGCTCATCTAACTGTGGATCAAAAGATGGAATGCAACAGGAGGAGAAAACCAAAGATCATTTCCTCGGAGTAATGGGTACAGATGTCCCACTGGATTATCTTCAAGACTTCATGCTACAACCATTGGTGGGGCCTAGTGGATATATGTTTGGAGTGAACAACAATGGGATGATAATATTCCACCCAAGACTGAAAACTGTGTATGGTTACCTGCTAGATCCCCCTGGTGTTGATCTGAAAGATGTGGAGTCGGCTGACAATGAAACTAAAATTTTAGAGCTCAGAAAAGCTATGATTGACACAGTTCGTGTTACTGCACCACCTCATGGAAGTGGTCCCAACAGCCAATCATTTGAAGTCTATGATTTGTCAGTTGACGAGCTTCGAGTGGTGAAACACACCCTGAATTTTTATTTTGATGGTGTGGAAGGAACATCATTTAGTCTTGGTTTGGCAACTCCTCAGCTTGGATACAAGTATAACCTAACAGGATACAAACATGCACAAGTCATTTCTGAACTGCACCAACTGCTTTTAAAGCAAGACAGCAAAAACACTGCAATTGAGAGGTGGCCATACTGCAGGAATGTAGTGTTTGCAGATTCAAGTCCACTGGAACAACTCATCAATGAAACAAAAGCTGGAGACACAAACCTTTGTCACAATATGGATTTACTTAGTGGTCTGCTGGTGGATGTAACTGTCACATCTAACATGTCAACAGTTTGGAGCAGTAAATCAAAAAAGGATGTTAAGGAGATATTTGTGAGGACCTTCTGGGGACTGACTCGAAATCTTAGTTTGACACAGAACAAGCTTGGTTCCACCTCACAAGGCAACTTTGTTGGAAGAGTTTTTGGATCACAACTTCCAAATACCTCCATCATGTACACAACACCCTACATTGCAGCTAAATCTGAGCAGAACACCTCGTCTGTGTTTGCCTACAAGAGAATTTTTGTACACCAGCGGCCTGTAGCAGTTTTAGGTTATGAGATGGACATGGATAACTTTGTCAAAGAGTATTTTGTGAAAAAGACAATGTGCGATGGACGACCAGAGTGTGATATTCACTGCGACAGGACTGGCAAAAACGATTTTGAAGGTCTCTACTGTTATCTCCTTGACGAAAATGGTTTCGTGGTGGCTGGAAATGTCGACGGCAGTTCAGCTGGTAAGTTCTTTGGCAGAGTAGACGCGCCTGTTATGGAGACGTTAATTCGCTCTGATGAAAATAGTACGTCTGGAATATACAACAAGGTGGTGTTGACAGACTTCCAAGCGGTTTGCGAGGAGAAAAGCGGTGTTAACAGCAGAGGAACTTCGCTTTTCCTTAAGCCTCTCTTATCTCTATCTGCGTACACAGAGTGGTGGACAACCAAAGCAGTTTGGTCTTTGCTGTATTTTAATCTATATAGTTGGATTTTCTCCGAGAGCGGGACAGCCACAGAAGCTGCCGATGACGTTCCAAAGAATGTGAGCTGTATCAAAAATGTGACCACGTATTATTCAACTAAGGAGGACATATCAGAGAGTGCGTGTGTAATGATTGTTATGTTTACTTGGTACGGCAGGCATCATGCAGTCTCCAGTGTGCCTAAAAGCAATCTGTACCTTGTGGTGATAGATGGCACTTGTGGGCCATGCTCGGAGTTTGTCAAGACTATGGCAATTCCTGGGGAACCTACAGAAAATATCCTTTTAGAACAAAGTGCGTGCTTTTGA

Transcript

ANN22609-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P54289	Voltage-dependent calcium channel subunit alpha-2/delta-1 OS=Homo sapiens OX=9606 GN=CACNA2D1 PE=1 SV=3
O08532	Voltage-dependent calcium channel subunit alpha-2/delta-1 OS=Mus musculus OX=10090 GN=Cacna2d1 PE=1 SV=1
Q8CFG5	Voltage-dependent calcium channel subunit alpha-2/delta-3 OS=Rattus norvegicus OX=10116 GN=Cacna2d3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000966 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08473 all species →	VGCC_alpha2	Neuronal voltage-dependent calcium channel alpha 2acd	Family	Interproscan
PF00092 all species →	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF08399 all species →	VWA_N	VWA N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR051173 all species →	Family	Voltage-dependent calcium channel subunit alpha-2/delta	Interproscan
IPR013680 all species →	Domain	Voltage-dependent calcium channel, alpha-2/delta subunit, conserved region	Interproscan
IPR013608 all species →	Domain	VWA N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10166 all species →	VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005245 all species →	Molecular Function	voltage-gated calcium channel activity	Interproscan
GO:0005891 all species →	Cellular Component	voltage-gated calcium channel complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN22609-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.