Detailed information of ANN22620-RA in Montipora grisea

Genomic Location: Scaffold_23__1_contigs__length_2932364:2340453...2346056
NR annotation: MCE2400306.1, DNA-directed RNA polymerase subunit beta' [Candidatus Poribacteria bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q3A6Q3DNA-directed RNA polymerase subunit beta' OS=Syntrophotalea carbinolica (strain DSM 2380 / NBRC 103641 / GraBd1) OX=338963 GN=rpoC PE=3 SV=1
Q39Y12DNA-directed RNA polymerase subunit beta' OS=Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15) OX=269799 GN=rpoC PE=3 SV=1
A1ALT5DNA-directed RNA polymerase subunit beta' OS=Pelobacter propionicus (strain DSM 2379 / NBRC 103807 / OttBd1) OX=338966 GN=rpoC PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04998RNA_pol_Rpb1_5RNA polymerase Rpb1, domain 5DomainInterproscan
PF05000RNA_pol_Rpb1_4RNA polymerase Rpb1, domain 4DomainInterproscan
PF04983RNA_pol_Rpb1_3RNA polymerase Rpb1, domain 3DomainInterproscan
PF00623RNA_pol_Rpb1_2RNA polymerase Rpb1, domain 2DomainInterproscan
PF04997RNA_pol_Rpb1_1RNA polymerase Rpb1, domain 1DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007081DomainRNA polymerase Rpb1, domain 5Interproscan
IPR012754FamilyDNA-directed RNA polymerase, subunit beta-prime, bacterial typeInterproscan
IPR007083DomainRNA polymerase Rpb1, domain 4Interproscan
IPR007066DomainRNA polymerase Rpb1, domain 3Interproscan
IPR006592DomainRNA polymerase, N-terminalInterproscan
IPR044893Homologous_superfamilyRNA polymerase Rpb1, clamp domain superfamilyInterproscan
IPR045867FamilyDNA-directed RNA polymerase, subunit beta-primeInterproscan
IPR038120Homologous_superfamilyRNA polymerase Rpb1, funnel domain superfamilyInterproscan
IPR042102Homologous_superfamilyRNA polymerase Rpb1, domain 3 superfamilyInterproscan
IPR000722DomainRNA polymerase, alpha subunitInterproscan
IPR007080DomainRNA polymerase Rpb1, domain 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19376DNA-DIRECTED RNA POLYMERASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03046rpoC; DNA-directed RNA polymerase subunit beta'EC:2.7.7.6
DNA repair and recombination proteinsko03400deepkoala

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