Gene detail

Detailed information of ANN22627-RA in Leptoseris scabra

Genomic Location: Scaffold_1__1_contigs__length_42512999:7397097...7416193
NR annotation: CAH3141054.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN22627-RA

ATGCTGTTCAAGTTTCCCTTAATGATCTGCTTAGCAGCGACTTGGAGTATAAAAATCGCCTCTTGTGGTCCAGTCAACGTTCTTTTGGAAAGCAACGGCGAGTCTGTCAAAGTCGGCGAAATCTTACTGGAAGATCTGCAGGAAGTTCAAGTTAAGAAGACGAAGTTCACCAGCAACTTGAGCTATGAAAACCAGGGATTATTGCGCAAGGCAGATCTTCACTTAGAGTTGTCGTTATCGACCCGAAATACCCGTGATAACGCAGGAATTAACTGCCATGACATCAAGTTAAAAGGGCATTCTAACGGAGATGGTATGTACTGGTTGGACCCGGATGGAGGAAGCCATTCAAATGCATTCTTGGGCTTCTGTGATATGACGTCACTAGGTGGAGGATGGACCATGTGTTACACCACCACTGACAAAGCCAAACCGAGAACCCAAACCACGTACAACGCAGAGACACCTTACGAATCAGATGGTTACAGGACAAACTGCAACAACATACTATTCACAGAAATCATCTTCATTGATCACCAAACTGGAAAAAAGGCATACTTTAAACGACGAACCCAGGCACCCATAAAAGCTGCCGTTAACTATGGAAACGCTGCTGGCACTTATGGATTGTGGAACGGTAAAGGAGCCATGAACGTTGGTTATGCTTATCAGCTGCTGATTTGTGATCATTCGTTCTACTCCGGCTTCTTTGTTTCTGGTTACACTGGTAACTGTTACAAGCGGTGTAACAGCTGGTGTGGTGACAGAGCCTCACCTTACTTTCGTACAGCGTCAACCCATGCGGCCTACGTCGGCGTGGCCTTCAATACCAATGGTCATAGCCCCAACGTGATTGCCTCAGCGTGCTTGATCGGTGAATGTCGGCAACTGGTGTTTCCAGGTTTTTTCCACTTTGCTGATAAACGTCTGGTGAACCACGGCATAAGAAACGTCCAAGTCAACGATGTAGATACGTGTGAACTGCTTTGTTACCACGAACCAAACTGTGTCAGTATTAATTTTAAGACCACAGCAAACGACAAGGGAACATACAGCTGTAAACTAAACCGCGCAACTCATCGTGGGTACGAGGCGGATTTTATGGATACTGCAGGTTACTCTTACCGTGGCACAGATAGCGCCTGTGATTATGCCAAGTGCAAAAACGGTGGTACCTGTCGATCCGGATTTACAGACAAACGATATTGTTGTTTCTGTCCTTCTGGTTTCACTGGTGAAGAATGTGAACATGATGTCGACGAGTGCGCTCATAATATACACACCTGCAGTGTGAATGCTGTGTGCAATAACACCAAGGGCGCCTTCAATTGCACATGTAAGCCTGGGTTCACTGGAGATGGACACAATTGTGCAGATGTTGATGAGTGCGTTGAAAATCTTCACAACTGCGGTTCTAATGCTGTGTGCAATAACAACCCGGGATCCTTCAACTGCACCTGCTCGCCCGGATATCATGGAGATGGACACAATTGTAGACCTCTAGGAGTTGACTGCAAAGATATCAAGACCCGCGGTGTTTCTCCGGCAGATGGTATGTCCTGGTTGGACCCGGATGGAGGAAGCCCTTCAAATGCATTCCAGGCCTACTGTGACATGACGTCGTATGGTGGAGGATGGACCATGTGTTACACTACCGATGAATACGCCAAACCCAAGACCGAAGTTACGTACGACGCTTCCTTACCTTATGGAACTGACGGGTACAGGACGAACTGTAACAAGATCCCATTCACAGAGATAATCTTCATTGATCATCAAACTGGAAACAAGGCTTACTTTAGGACAACTAGCCAGAGACCATTAACGGCCGCTAACAACTACGGCAGCACCAATGGATTGTGGGACGGTTTTGGAGCCAAAAGCAGCGCTTACTCCTACCAGCTGTTGATCTGTGATCATTCGTTCTACTCCGGCTTTTTTGTTTCTGGTTACACTGGTAACTGTTACAAGAAATGTAACAGTTGGTGTGGTGACAAAGCTTCACCTTACTTTCGTACAGCGTCAACCAATGCGGCCTACGGCGGCGTGGCCTTCAATACCAATGGTCATCACCCTAATGTGGTGAGCCACAGGCTGATGAGTGTTGGTCTGCGCTAA

Transcript

ANN22627-RA

Protein

Uniprot

Uniprot term	Description
A1A5Y0	Protein kinase C-binding protein NELL2a OS=Danio rerio OX=7955 GN=nell2a PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12947	EGF_3	EGF domain	Domain	Interproscan
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF01410	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR051586	Family	Protein kinase C-binding NELL	Interproscan
IPR024731	Domain	EGF domain	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR003609	Domain	PAN/Apple domain	Interproscan
IPR002181	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000885	Domain	Fibrillar collagen, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24042	NEL HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0008201	Molecular Function	heparin binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005201	Molecular Function	extracellular matrix structural constituent	Interproscan