Detailed information of ANN22652-RA in Montipora grisea

Genomic Location: Scaffold_23__1_contigs__length_2932364:2927564...2929466
NR annotation: MCE2403314.1, dTDP-glucose 4,6-dehydratase [Candidatus Poribacteria bacterium]
Species Montipora grisea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P27830dTDP-glucose 4,6-dehydratase 2 OS=Escherichia coli (strain K12) OX=83333 GN=rffG PE=1 SV=3
P26391dTDP-glucose 4,6-dehydratase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=rfbB PE=1 SV=1
P37777dTDP-glucose 4,6-dehydratase OS=Shigella flexneri OX=623 GN=rfbB PE=3 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0011100 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05721
all species →		PhyHPhytanoyl-CoA dioxygenase (PhyH)DomainInterproscan
PF16363
all species →		GDP_Man_DehydGDP-mannose 4,6 dehydrataseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008775
all species →		FamilyPhytanoyl-CoA dioxygenase-likeInterproscan
IPR005888
all species →		FamilydTDP-glucose 4,6-dehydrataseInterproscan
IPR036291
all species →		Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR016040
all species →		DomainNAD(P)-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43000
all species →		DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008460
all species →		Molecular FunctiondTDP-glucose 4,6-dehydratase activityInterproscan
GO:0009225
all species →		Biological Processnucleotide-sugar metabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01710rfbB, rmlB, rffG; dTDP-glucose 4,6-dehydrataseEC:4.2.1.46
Acarbose and validamycin biosynthesisko00525deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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