Gene detail

Detailed information of ANN22722-RA in Leptoseris scabra

Genomic Location: Scaffold_1__1_contigs__length_42512999:9379509...9388405
NR annotation: CAH3035730.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN22722-RA

ATGATAGAAATGAATCACCCACCCAATGTCACATCAATAACCGACTACTACGTGGTATACGGAGAGAAACTCGAACTGCCCATTGAAGCCACTGATCCCGAAGGAATGCCAATCACTATCACCCTCATGGAGGGAAGCCCTAAAGAAGCACTCATGCAAAACAACATTCTACTTTGGAACGTCACTACAAACAAAACAACTCAGTTTTTCTTCAAGGCCACCGATGCATGTCAAGCATCATCTACTTTAAACATCACTATAACTATCAATATCTGCCAGTGCAACAACAGTGGACTATGCATTCCTCGGAAGCCTCGCGGACGAGGATATTATGTGTGTAATTGTGCACCTGGATTTACTGGACAATACTGTAATACTGAGATTGATGAATGTGAATCTTTTCCTTGCTTACGAGGGCGATGTATTGATCAAGTTAATAACTACACATGTTCTTGTGATCTTGGGTTTGAGGGAAGGAACTGTGACGTTGACATCGACTATTGCAAGTCATCTCCATGTGTTCATGGAAACTGCACAGATCAAGTTAATGAGTACACCTGCAGCTGTGAACCTGGTTACACTGGACAGCGATGCGAAACTAATATAGACGAGTGTAGTTCATCGCCGTGTAGCAATAATGGAACCTGCCAGGATCACGTTAATGGCTATAACTGCCAGTGCCTCGTTGGTTTTATAGGACGAAACTGTGATGTGAATATTAACGAATGCCAGTCTTCTCCTTGTTTAAATGGCACTTGCATTGATAAAGTCAATGGCTTTAGCTGCAGTTGTCAAGCTGGATTCAGTGGCTTACTATGTGAAGAGAACATAAACGAATGTCTCCACGTATCCTGTGGAAATGGGACTTGTCTTGACCAAGTGAACAACTACAGCTGTATTTGTAACGTTGGTTACACAGGCCGATATTGTGATGTCGTCATCACCCACTGTAGCAATGATTCATGTTACCCAGGAGTACCCTGTAATGAAAATAGTTACGTTATCTCTTGTGGCTCTTGTCCACCTGGTTTTACAGGGGACGGAAAAAACTGTAAAGACATAGACGATTGTGTAAATCGCACATGTGCTAACGGTGGATCATGCACAGATGGGATCAATAGTTATTCCTGTAACTGCCTGGTGGGATACACTGGAAAATATTGTCAGATTGACATCGATGACTGTGTCAATCGCACATGCGCTAACGGCGGATCGTGTGTTGATGGTGTCAATAGTTACTCGTGCAGCTGCGTGGCGGGATACAGTGGGGACCACTGCGAAAAAGACATAGATGACTGTGTCAATCGCACATGCGCTAACGGTGGATCGTGTGTGGATGGTGTCAATAGTTACTCGTGCAGCTGCGTGGTGGGATACAGTGGGGACCACTGCGAAAAAGATATCGACGACTGTGTTAATCACACGTGTGCAAACGGTGGATCATGTATTGACGGTGTTAATAGATACTGGTGCAACTGTTCTGAGGGCTTTACTGGATCAAGCTGTGAGAATAACATCGATGACTGTGTTAATCACACGTGTAAAAACGGTGGATTTTGTATTGATGGTGTTAATAGATACTCGTGCAACTGCTCTGAGGGCTTTACTGGATCAAGCTGTGAGAATAATATTGATGATTGTGTAAATCACACCTGCGCTAACGGTGGATCCTGCACAGATGGCATCAACAGTTATTCCTGTAACTGCCTGGTTGGATTTACTGGAAATTATTGTCAGATCGACATCGATGACTGTGTCAATCGCACATGCGCTAACGGCGGATCGTGTGTGGATGGTGTTAATAATTACTCGTGCAGCTGCGTGGCGGGATACACTGGGGACCACTGTGAAAAAGGTGCCGAGTTTATGTCCAATTTACCTATATCGACGACTGTGTTAATCACAAGTGTGCAAACGGTGGATTATGTATTGATGGTGTCAATAGTTACTCGTGCAACTGTTCTGAGGGCTTTACTGGATCAAGCTGTGAGAATAGTAAGTAAAGGTCTTGTATTCACTATCGTTTATTCTTTTTACAACTTCAAATCAAAACGACCATTATGCAATTTTAGCCGGATGTACTTAACTTTTCCCTGGGCATCTAACCATGGCGACCAAGTACACGCACGCTGGATGAGTCCAATTTTCTACGTATCTAAGATAAAGGTTGTAGTGACCATCTGGGTATGGTTCAGCTCGATCTATGGATATTGTGCCCCGAGGTCGCCTTGGGATGTTTGTCATCTGGATGGGTTCTTCTCTGTTCTCTTTGGTAGCTTCTTGGCATTCATAGCATCGGTCGATGACTGTGTCGATCATACTATTCACTTATGGGGAAGCGGTATTTCACTCTTAGTATCTGATTGGTTTTGGTCTTGCACAAGTGTCATAGGCCCTGTCCTAGCTTGA

Transcript

ANN22722-RA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000310 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR051355 all species →	Family	Notch and Slit guidance protein	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45836 all species →	SLIT HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN22722-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.