Gene detail

Detailed information of ANN22737-RA in Montipora grisea

Genomic Location: Scaffold_22__1_contigs__length_3165292:1318963...1321698
NR annotation: RKU12755.1, hypothetical protein C6502_05260 [Candidatus Poribacteria bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN22737-RA

ATGGGCAGCGGCGCGTGTATTGGAGCGATTACAGAGGATGGTAAAAGCGTCCGGCTCATCCCGTTCAACGAGGACCCGCATGAAGGAGCAAATCGAGAATATGAAGTCGGAGAGGTTTGGGAAATTTCTATCGAACCTGTAACCGACTTGAGTCCACCCCATATAGAAAACGTCGTGGTTTATGAGAAGCGTCGGATCCGCACTGCAAATGACTTAATTGGATCTATCAAACGATTTATGCCTCCCAAAAACGGACATCCATGTGGACTTTATGAAGGCTTATTGCAATCCACAGAAAGCGGTGCCCTTTATATTGCCAAGCAGAGCGGTGTTCCACCCTACAGTACAACGTTTTGGCGCCCAGATCGACAGCTCATCCGTGATACGGCAGGAAAAAGGGTGCGGTATCGCTATCCTACCGAAAATGGTGGTTGTACACTCACCTTTGTCGGTTTCCAAGAACCACTTGAAGTAATTCCCGCAGGCACACTCCTACGTGTCTCGCTGGCACATTGGTGGCGACCGGAAGATACGCCGGAGGCAGAGGAACGCTGCCACGCACAACTTTCTGGCTGGTTTCTCGAAGAAGAACCCAAACGTTCGATTGAAATAGAATCGCCCCCACCTCAAACGTTGCTTCAAGCACCCTTAGAGACTCTCAAAAATGTTTTTGGGCATGAACAGTTCCGCCCGTTGCAGGAGGAAATCATTAGCCACATCCTCAACCGGCGCGATGCGTTGGTTGTTCTGCCGACGGGGGGTGGCAAGTCGCTCTGCTATCAACTGCCTGCCCTTATCTTCGATGGCGTAACCGTTGTTGTATCTCCGCTGATCTCGCTTATGCAGGATCAAGTGATGCAGCTGCAAGGGCGGAGTATCCATGCCGTTTTTCTCAATAGCACTCTCAGCCATCCAGAATACGTTGCCACAATGCAGCGTGTCAAAAGGGGTGAAGTTAAGCTGCTTTACGTTGCCCCTGAAACGCTCATACGTCCTGAAATACTGTTGATGCTTGATGAATCGAATGTGGCATGCCTTGCGATTGATGAAGCGCACTGTATTTCACAGTGGGGGCACGATTTTCGTCCAGAGTATCGACAACTGGTCTCTGTTCGGAAGCGATTCAAAAACGCCGTCTGTGTTGCGCTGACGGCTACCGCCACTCCACGGGTTCAACAGGACATCAAGCAATCGCTCACAATTCAGAAGGAAAATGAATTCGTTGCCAGTTTTGACAGAGAAAATCTCTTCATCGCTGTTGAATCGAAGGTTGATTCGTCTAATCAGACGCTGGAGTTTCTCAATGCCCATCGTGATGAATCCGGTATCATCTACTGTCAGACTAAGAAACAAGTTGAATCGTTGTCTCGCGAGTTAGGTGCCCATGGGATTTTGGCACTCCCCTATCACGCAGACTTGGATAGCGACGTCCGCAGGCAGAATCAGGAGGCCTTTATCAACGGCGACACCCGGGTAATAGTCGCAACAATTGCCTTCGGTATGGGGATTGATAAAGAGGATGTACGCTTCGTGCTACATGCGGGTTTGCCAAAGGAGCCTGAATCTTACTATCAGGAAATTGGACGCGCTGGACGAGATGGAAACCGGGCGGAATGTCTCTTACTTTTTAGCTATGGCGATGTAGACACCATCCACCACTTTATCGATCAAGGCGCGCCATCTGAGCGAGAAGGGCGATTGGAACGATTACAGACGCTTGTTGAGTGGGCAACTTCTACAGAATGCTTCCGCAAAAGACTCTTGGCTTATTTCGGCGAGCAGTATGAGAATCAAAATTGTGGGATGTGTGACAACTGCCTCCAAGCGGAAATGGATCGAGTTGATTTAACGGAACCGGCTTGCAAATTCCTCTCCTGTGTTATTGAAACAAAGGAAACTTTCGGTGTAGAGCATATTATCAATGTATTATTCGGTTCAAAAGCAAAGAAGGTTGTTAAAAACCGGCACCACCAACTCCCTACCCACGGTGCTGGCAGGGAGCATGACAAAACACAATGGAAACATCTGGCACTACAATTCATCCAACACGGACTCCTTAAGAGAGATCCACAACATGGGAGTCTTCGTTTGACGCAGCGGGGAGGGGCAGTGCTGGAAAGAGAAGAGCGGTTTTGGGGATTTCCAGTGAACCCAACAAACCAGATAGCTGACGAAAACCGATCTAAAGAAGAAGGAAACCGGACATATCTTTCAGAGCCGCACCCAACAACAAAGCCAATCAAGTTATACGAAATACGCGGCGAAATTGAGACAACGCTTTTTATGTCAGAAGAAGAGACTTTCGATAGCTCACGGTTTGAGGAGCTTAACCTTTCATTTGATGAGAAAGTTGATAGCTGCGCCACTGTGATGAAGAATCTCAAGGCCCAAGCAGCTGAACTTGAGGCAAAGTGTGAAATTCTTCGGGAGGAAATTCTGTCCCTCCAAAAGAAAAAGCAAGCTCTAGAGAACAATCGCAAAGGACTCGCTGAGTATATCAAGGGCATTATGGAGTCGATTGGTCTAAAGAAAGCTGGAAACATGTTGCACCGGGTAACGATCGCGCAATCGCCTCTCACAGTAAAAGTCAACATAGAGGAACTTGATCCAAAATGGATTAAGAAACACGTATCCACATATCCTGACAAGCGCGGGATTATTGACCACATCAAGGAAACCGGTGAAGTCCCCAATGGCGTCAAACCTATTCAAAACACGCACATCCGAGTAAGTTAG

Transcript

ANN22737-RA

Protein

Uniprot

Uniprot term	Description
P71359	ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=recQ PE=3 SV=1
O34748	ATP-dependent DNA helicase RecQ OS=Bacillus subtilis (strain 168) OX=224308 GN=recQ PE=1 SV=1
Q9CL21	ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain Pm70) OX=272843 GN=recQ PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05565	Sipho_Gp157	Siphovirus Gp157	Family	Interproscan
PF09382	RQC	RQC domain	Domain	Interproscan
PF16124	RecQ_Zn_bind	RecQ zinc-binding	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004589	Family	DNA helicase, ATP-dependent, RecQ type	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR008840	Family	Siphovirus Gp157	Interproscan
IPR018982	Domain	RQC domain	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR032284	Domain	ATP-dependent DNA helicase RecQ, zinc-binding domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13710	DNA HELICASE RECQ FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0043138	Molecular Function	3'-5' DNA helicase activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan