Gene detail

Detailed information of ANN22754-RA in Montipora grisea

Genomic Location: Scaffold_22__1_contigs__length_3165292:1649768...1652455
NR annotation: RKU07287.1, DNA helicase RecG [Candidatus Poribacteria bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN22754-RA

ATGAATGAACTCTCCAAAATTCTAACAACAATCCGACGTCCGTTTCAGCAAGAAATTCGGAGCGGTTGCCAAGACAGTGTGGTGATTAACGGATTAGGTGCCTATGTTCAACTCTGGGTCAGGAATGCCCAGCAGTTGATGCTCAACCCTACTGAGGAGCAGATGTTGATTTCCCTTGCAGATCTGTTCTCAGATTACGGTACCTCCTCGCCGACGGAGCGGCGGAAGGTCGTGCAAGTTGCTATGAAGCAGATTGACGAGATAACATCAGGGAATCAGAAGGCGCCGCCTACTAGAAAACCTGCGGCAACTGTTTCCGTTGCCGATCTTCCTTTATTTCAATCGTTACCTAGCCAACCACCGAAGACCTCTTTCCCTTCGATGGAACAAACTGGCGAGGCTAGGGAGCAGCAAACACTTTTCCCTGCCGATCCAAAGCTCGGCGGAACGTTAGGGACAGTTGAATCACTCCCTTCACGCTTCACTGCCCATCCCGATCCGTCGGATCCTCACATATCAGGTCCTGATTCACAAGCTGTACCGCCAGAAAAGGTGCGGATTAAAGAGGTCCCCATCTCAACCAATCCGGCGTCACTGAAATTCTTGGAGACGGAGATTCGGTATGCAAGTGGAATCGGCCCGCACCGGGCGGCGAAACTGGCAGCGGAGCTCAATATTCGCACGGTTGGTGATTTGCTAGAACACTACCCGCGTGACTATCTCGATCGGGGGCATCTCCGGTCAATTTATGAAGTGGGACGTACCGGCGAATATGAGACGATTCAAGGCGTGGTGGTCAATCAAAGCCAATTTACGCCGAACCGCAGGAGTGCACAATCCGTCGGCAAAATTGCTATCTATGACCAGACCAGTGTGGCGCAGTTGGTCAACTTTGGGCGTCGTATCGGTTATCTCAAGAATCTGCTGAAACTCGGCACGCCTGTTGTCGTGAGCGGCAAATTTACCCGCCGCAACGACGAAATCCAAACCACCGACTTTGAATTTGAGGTGCTTGAAGCGGAGGATGCTGACCTCATCCACACGGGCAGAATTGTGCCGAAGTACGCACTGACAGCGAAGCTCACCCAACGGATGCTTCGACAGTGGGTTAAGACGGTCTTAGACGAGTACGTCGAGAAGTATCCAGAGATTTTGCCGCTAAACATCCGACAGCAGCATCAGTTGATAGATCGGCGCACTGCAATCCAAGAGATCCACTTTCCTGCATCAGAGGCACATAAGGAGGCGGCGCGAAGGCGGCTAGCGTTCGATGAATTTTTCCTGCTGGAATTGGGACTTGAGCTCAAAAAGCAACATTGGAAAACAGAGGAGAAGGGGCTCGCTTTTCAGATCGAAGGTGAACTGTTAGATCGGTTTATTGAGGCTCTGCCCTTCCAATTGACATCCGCTCAGAAACGGGTCATTAAGGAAATTAAGTCCGACATGGCAAACAGGCAGGCGATGAATCGGTTACTTCAAGGGGATGTCGGATCCGGGAAGACAATTGTTGGAGTGGTTACCACCCTGTGCGCGATTCAGAGTGGGTATCAGAGCGCGCTGATGGTGCCCACAGAAATCCTCGCCGAACAACATACCTACAACCTCTCGGAATTGCTTGAACCGCTGGGCCTGAGGGTTGTCCTACTTAAAAGTGATCTTCCTAAAACGGAGCGTGACGAAGCCCTTACTGCCATTGCCGATGGCTCTGCTCACATCGTTGTCGGAACGCACGCCCTGATTCAAGAAGGAGTAGAGTTTCATCAGCTGGGATTGGTAATTATTGACGAGCAGCACCGCTTTGGCGTGATGCAACGGGCGATGCTCCGGGACAAGGGAACAACCCCGGATGTCTTGGTCATGACAGCGACTCCCATCCCGCGGTCACTCGCCCTAACAATTTATGGCGATCTCAATGTGTCCGTGATCGACGAACTCCCGCCGGGACGGCAACAAATAACGACGAAATGGGTGAGGGAAGAGAACCGCGAAAAACTGTACGCCCAAATAGAGAAGGAGGTACAGCGCGGGCGACAGGCGTACATCGTTTATCCGCTCGTTGAAGAATCGGAGAAGTTAGAGGAAATTAAAGCGGCGACCGAGATGGCGGACCACTTTCAGGTGGCTGTGTTTCCGCACCTACGAGTTGGATTGCTACATGGACGGATGCGATCGGCGAAAAAGCAGGACGTGATGGGTCGCTTCAAAAATAAAGAGATTGATATTCTGGTGTCCACCACTGTCATCGAAGTTGGGATTGACGTGCCGAATGCCTCGCTCATGGTAATCGAAAACGCGGAGCGGTTTGGACTGTCGCAAATGCATCAGTTACGGGGGCGCATCGGGCGGGGAGTGCACAAATCCTCCTGTCATCTGATCGGCAGTCCAAGGACCGACGATGGGATACGTCGAATCAAGGCGATGACGCGAACCAATGATGGTTTCGAGCTTGCGGAGGCGGATTTGGAGATCCGAGGTCCCGGCGAATTTTTTGGAACCCGCCAATCCGGGCTTCCGGACTTCAAAATCGCCAATATCCTCAGGGATACCTCGTTGCTTGAAACTGCTAAATCAGAGGCGAATCGGCTCGCTAAGGCAGACCCAATCCTGGGCCAACCCGCACATCGGGTATTGAAAGAGGTGTTACAGACGCAGTGGCGTGGACATTTGAAAATGGCATCAATCGGTTGA

Transcript

ANN22754-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q55681	ATP-dependent DNA helicase RecG OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=recG PE=3 SV=1
O34942	ATP-dependent DNA helicase RecG OS=Bacillus subtilis (strain 168) OX=224308 GN=recG PE=1 SV=1
Q9WY48	ATP-dependent DNA helicase RecG OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=recG PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0028372 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF17191 all species →	RecG_wedge	RecG wedge domain	Domain	Interproscan
PF19833 all species →	RecG_dom3_C	ATP-dependent DNA helicase RecG, domain 3, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR004609 all species →	Family	ATP-dependent DNA helicase RecG	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR033454 all species →	Domain	RecG, wedge domain	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR045562 all species →	Domain	ATP-dependent DNA helicase RecG, domain 3, C-terminal	Interproscan
IPR047112 all species →	Family	ATP-dependent DNA helicase RecG/Transcription-repair-coupling factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47964 all species →	ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03655	recG; ATP-dependent DNA helicase RecG	EC:5.6.2.4	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.