Genomic Location: Scaffold_22__1_contigs__length_3165292:1864809...1867793
NR annotation: RKU06055.1, RNA-splicing ligase RtcB [Candidatus Poribacteria bacterium]
| CDS | ||||
| ANN22760-RA | ||||
| Transcript |
| ANN22760-RA |
| Protein |
| ANN22760-RA |
| Uniprot term | Description |
|---|---|
| Q58095 | tRNA-splicing ligase RtcB OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=rtcB PE=3 SV=1 |
| Q8U0H4 | tRNA-splicing ligase RtcB OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=rtcB PE=3 SV=1 |
| Q9V168 | tRNA-splicing ligase RtcB OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=272844 GN=rtcB PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14890 | Intein_splicing | Intein splicing domain | Family | Interproscan |
| PF01139 | RtcB | tRNA-splicing ligase RtcB | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR030934 | Domain | Intein C-terminal splicing region | Interproscan |
| IPR003586 | Domain | Hint domain C-terminal | Interproscan |
| IPR001233 | Family | RNA-splicing ligase, RtcB | Interproscan |
| IPR004042 | Domain | Intein DOD homing endonuclease | Interproscan |
| IPR036025 | Homologous_superfamily | tRNA-splicing ligase RtcB-like superfamily | Interproscan |
| IPR006141 | PTM | Intein N-terminal splicing region | Interproscan |
| IPR006142 | Domain | Intein | Interproscan |
| IPR053454 | Family | tRNA-splicing ligase RtcB | Interproscan |
| IPR003587 | Domain | Hint domain N-terminal | Interproscan |
| IPR027434 | Homologous_superfamily | Homing endonuclease | Interproscan |
| IPR036844 | Homologous_superfamily | Hint domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11118 | UNCHARACTERIZED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0006396 | Biological Process | RNA processing | Interproscan |
| GO:0008452 | Molecular Function | RNA ligase activity | Interproscan |
| GO:0004519 | Molecular Function | endonuclease activity | Interproscan |
| GO:0016539 | Biological Process | intein-mediated protein splicing | Interproscan |
| GO:0000971 | Biological Process | obsolete tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate | Interproscan |
| GO:0003972 | Molecular Function | RNA ligase (ATP) activity | Interproscan |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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