Gene detail

Detailed information of ANN22784-RA in Leptoseris scabra

Genomic Location: Scaffold_1__1_contigs__length_42512999:10685647...10693677
NR annotation: KAJ7383420.1, hypothetical protein OS493_028096 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN22784-RA

ATGCCGTTTTATGAATCTCTTAGGTGGTTCAAATTTGAGAGAGCTGTGGAAGCTCTCGTGGCCAACAAGACCTATTATATGGATCTTGATCAGCTCCTGGCTGTCGTCACCAATGTTTGCCAAATCTATGACCAGGACGAAATGACAGCCATGTTGAATTTCTATCATGATCTCGGTGTGATTGTTAAGCATGGTCGCACTGTGGTGTTACAAGCCCAGTGGCTAATTGACCTTTTCAAGCAGCTTATAACCGTGCGGCCTTTTCATGAGGCGGTACCTTTGTACTCGGAGTGCTGGAAAGACCTCGAAGAAAGCGGCATTCTCAGGATGGCTCTTGTCGATCACGTTTTTGAAGATATCATTGATAACAGGAAAGGACTTTTCAAAGAGGACATTCTGGACATGATGGAGCTCTATGGATTAATCGCCAAATTTTCTTGCTTGTCTTCTGAAAGTGAGCATGAGCAAAGATACTTTGTACCTGCACAACTTAGATCATCCCCGGCTGGCCTGTGCGAGATAAAGCCCTCGAAGAGTGATCCTTGTTCACTGTATCTCCACTTTCTCAATGGCTTTGTTCCACATGGGCTGTTTTCTCAGTTCCTGTCAAGATGCATCAGTTGGTGCTCCAAACATGGCATCAAACAAGCTCCTCAGCTGTACAACAACGGCGCCAGGCTTTTCATTGGAGTGCAGGCCATTTTTGACCTCGTCCTGATTTGCAGAAAGAGATTCATCAAGGTCATATTGAAGAGAAGAAAGCCGACTTCACCTGAGCCATCATCAACCACTGCATCATCAAAAATGGCTGTTGAAGTTCGCACCTTTGTTGAGAAAACCTTAGAAAGCTTGTCACGTGACCTATCCTGGTTACGTAATCTCCAGTATGAGCTGAGTGTTGCATGCCCACATTGTGTGGAAAGTAGTGAGAAATGTTCCAAACACGGATTGGTGCGTTGTGGTCAAGATGATTGCCTAAATCTTCTCCAAGTGTGTCCTGGAGAAGAGCTGATTTGCCGGAAGAGCTTTTCCGATGAAGCAATCAAAGTTCATGGATTGGAAAAGTGGTTTCAAGTCGAAAACTCACAGACTGAAGAGCAGAAAATGGAATCCTTAGCGCCAAAAGGTAACGCTTGGACGTTGGTGGTGGTGGTGGTGGTGCCTAGGGGATACGTTACAATTGGGGCTCTGCCCTGTTCGTCTCTCCGGTCACGCCACAGCATTGTTATTATATGTGTAATACAAATAACGACAGCGGCTTCTTTTACATGCTTTGCAGGTTTGGATCAACCCCTGTTACTGAAGACCGGTACACCCTCATCCGACGATCTTCTCCTCGTTGCCCACGAGCTCGGTACCTCGTGGAAGATGCTTGGTAGAGCTCTGGGACTTCCTGAAGCTGTGCTGGAACAAATTGAAGAGGACGAGCCTAAACTCTTTGAAAAGTGCTACAGTGTTCTGAGAAACTGGACAGAGGCCTTTGGATCTGCCGCTACATATCAATGCCTAGCACGAGCATTGCAGCATCCCATTGTGAGACTACCACGGCTGGCTGTTAAGTACTGTGACATACACGCTTGCAGGGACACAAGTGAAGCCGCCGCAGATTCCTGTGCTCTCATGTGCAAGCCATCTGATGCATCACCTTCGAGTTACCCCGTCTTTCTTTCGTACCAATGGGATCTGCAAGACACAGTCAAGATACTGAAAAGCAAGATTGAGGAGAGCGGGTTTCATTGTTGGATGGACATTGGACAGATGGGGGGTGGCGACGTACTGCTTGCTGAGATAGATGCAGGGATTCGAGAATCCAAGGTATTTGTGTGCTGCGTAACAGAGAAGTATATTCAATCAGACATGTGTCAGCGCGAGGCCACATTAGCCGACCGCCTTAAGAAGCCGATTATCCCTCTGTTGTTTGAAGACATTCCTTGGCCTCCAAAGGGACAACTCTCTTTGATCTTTGCAAGGCTTCTTTATATTAGGATCAATGACAAAGGTGGTACGATTCATGCTTCAGAGTACGACCAGCTCACACAGAAGAGGTATAAAACCTAG

Transcript

ANN22784-RA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13676	TIR_2	TIR domain	Domain	Interproscan
PF00531	Death	Death domain	Domain	Interproscan
PF16095	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR000488	Domain	Death domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR032171	Domain	C-terminal of Roc (COR) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47508	SAM DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan