Gene detail

Detailed information of ANN22906-RA in Montipora grisea

Genomic Location: Scaffold_21__1_contigs__length_3404173:1490701...1493373
NR annotation: MYC94296.1, DNA helicase RecQ [Caldilineaceae bacterium SB0661_bin_32]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN22906-RA

ATGCGAGACCTTCTAAAGCAGCACTTCGGTTATGACGAGTTTGTGCCGCCTCAGGAAGAGATCATATCCAGTGTTCTGGATGGTAGAGACGTCCTGGTTCTTATGCCGACGGGAGGAGGGAAGTCGCTGTGCTTTCAGTTGCCCGCGCTGCTGCTCGATGGGTTGACGCTGGTAGTCTCCCCACTGAGAGCGCTGATGGATGACCAGGTGGCCGCGCTGAAGGCCAAAGGCATCGCCGCAGGCGCATTGCATACCGCCGAGAGACGCAGCGTCGAGGAAGAGGCACTAAACGGGGCTCTCAAAATCCTGTATGTCGCTCCGGAAAGGCTTGCCCAGAAGGCTTTCCAGAAGAACTTTCTTGCCAGACTCAAGGTCAGCCTTGTAGCAATTGACGAAGCGCACTGTATTTCCGAGTGGGGTCACGATTTTCGTCCTGATTACCGCAGACTGGGCGAACTCCGCCCTATCCTGCCGGGCGTCCCCTTTCTGGCACTGACGGCCACGGCCACCGAACGTGTGCGCGACGACATCGTCGACCAACTGAAACTTCGCCAGCCGCAGAAGTACATCGCTAGTTTCAATCGTGCCAACCTCAACTACAGCGTTGTTCCCAAAAGAGGGGATGGCTTCGATACTCTTAAGAAACTGCTGCAGAAGCACAAGGGTGAGTCGGCGATCATCTACTGTACTTTCCGCAAGGATACTGAGAGCCTGGCCGCACGTCTGCGCGATAGCGGATTTGACGCCCAACCCTATCACGCCGGTCTGGATGACCCGGATGACCCGGATGACGAAGTGCGGAGGCGAACGGCGGAGCGCTTCATGCGCGACGAGGTCACCATTATTGTTGCTACCATCGCCTTTGGAATGGGCATCGACAAGCCCAACATTCGACTGGTCGTCCACTACTCGATGCCCCAATCGCTTGAGGGTTACTACCAGCAGACCGGCCGCGCGGGGCGCGACGGCGAGCCCAGCGACTGCGTTCTACTGTACACCTATGCCGATGCGAAGTTCTTCTTCGGCAAGATCGAGGAGATCGAGGACGAGGAGATCGAGGACGAGGCGGTGCGGCGCCATGCCCGCCGAAGGTTGGAGCAGATGGTCGAATTTTGCCAGCTTCGTACGTGCCGGCGTAAGTACATTCTGGACTATTTTGGAGAGGAGTGGGCCAAGAAAAACTGCGGCGGCTGTGATATCTGTCTAAAGCAGTACTTCGGTCATGACGCGTTTTTGCCTGTACATGGGCACGTGGACAAGCGGGCGTATATGCGCGCCCTTCTAAAGCAGCACTTCGGTCATGACGCGTTTTTGCCGTTTCAGGAAGAGATCATATCCAGTGTTCTGGATGGTAGAGACGGCCTGGTTCTTACGCCGACGGGAGGAGGGAAGTCGCTGTGCTTCCAGTTGCCCGCGCTGCTGCTCGATGGGTTGACGCTGGTAGTCTCCCCACTGAGAGCGCTGATGAAAGACCATGTGGACGCGCTTAGATCCAAAGGCATCGCCGCAGGTGCATTGAATAGCACACTGACATCCGCCGAGAGACGCAGCGTCGAGGAAGAGGCACTAAACGGGGATCTCAAAATCCTGTATGTCGCTCCGGAAAGGCTTGCCCAGAAGGCTTTCCGGAACTTTCTTGCCAGACTCAAGGTCAGCCTTGTAGCAATTGACGAAGCGCACTGTATTTCCGAGTGGGGTCACCAATTTCATCCCGGTTACCGCAGACTGGGCGAACTCCGTCCTGCCCTGCCGGGCGTCCCCTTTCTGGCACTGACGGCCACGGCCACCGAACGTGTGCGCGGCGACATCGTCGGCCAACTGAAACTTCACCAGCCGCAGAAGTACATCGATAGTTTCAATCGTGCCAACCTCAACTATAGCGTTGTTCCCAAAAGAGGGGATGGCTTCGATACTCTTTTGACACTGCTGCGGAAGCACAAGGGTAAGTCGGCGATCATCTACTGTGCTACCCGCAAGCAGACCGAGAGCCTGGCCGCACGTCTGCGCAATAGCGGATTTGACGCCCAACCCTATCACGCCGGTCTGGATGACCCGGATGACGAAGTGAAGGAGCGAACGGCGGAGCGCTTCATGCGCGACCGGGTCACCATTATTGTTGCTACCATCGCCTTTGGAATGGGCATCGACAAGCCCAACATTCGACTGGTCGTCCACTACTCGATGCCCAGATCGCTTGAAGGTTACTACCAGGAGACCGGCCACGCGGGGCGCGATGGCCTGCCCAGCGACTGCGTTCTACTGTACACCGATAGCGACAAGGCCAAGCTGGAGTTCCTCATCGGCAAGATCGAGGACGAGGCGGTGCGGTACCATGCCCGCCGAAGGTTGGCGCAGATCGTCGAATTTTGCCAGCTTCGTACGTGCCGGCGTAAGTACATTCTGGACTATTTTGGAGAGGAGTGGGCCAAGGAAAACTGCGGCGGCTGTGATATCTGTATCAACAAGCAGGATACAGGGTCGCCGGAGGTACAGGTCGCACTGTTGACTCCGCGCATCAATGCGCTGGCCGACCATCTCAAGACCCACAAACATGATGAAGGCTCCCGCAGGGACCTATTGAAGCTGGTCCACCAGCGGAGCGAGCTTCTCGCATATCTGCAAAGAAAGGACGTAACCAGATATCGTCAGTTGCTTGAAAGGCTAGGTCTGTGA

Transcript

ANN22906-RA

Protein

Uniprot

Uniprot term	Description
P15043	ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12) OX=83333 GN=recQ PE=1 SV=5
P40724	ATP-dependent DNA helicase RecQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=recQ PE=3 SV=3
Q9CL21	ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain Pm70) OX=272843 GN=recQ PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF16124	RecQ_Zn_bind	RecQ zinc-binding	Domain	Interproscan
PF00312	Ribosomal_S15	Ribosomal protein S15	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005290	Family	Small ribosomal subunit protein uS15, bacterial-type	Interproscan
IPR000589	Family	Small ribosomal subunit protein uS15	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR004589	Family	DNA helicase, ATP-dependent, RecQ type	Interproscan
IPR009068	Homologous_superfamily	uS15/NS1, RNA-binding domain superfamily	Interproscan
IPR032284	Domain	ATP-dependent DNA helicase RecQ, zinc-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13710	DNA HELICASE RECQ FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03654	recQ; ATP-dependent DNA helicase RecQ	EC:5.6.2.4	DNA repair and recombination proteins	ko03400	deepkoala