Detailed information of ANN22990-RA in Leptoseris scabra

Genomic Location: Scaffold_1__1_contigs__length_42512999:14527972...14542763
NR annotation: XP_029200394.2, telomeric repeat-binding factor 2-interacting protein 1-like isoform X1 [Acropora millepora]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q0VCT3Telomeric repeat-binding factor 2-interacting protein 1 OS=Bos taurus OX=9913 GN=TERF2IP PE=2 SV=1
Q6NYJ3Telomeric repeat-binding factor 2-interacting protein 1 OS=Danio rerio OX=7955 GN=terf2ip PE=2 SV=2
Q7T0L4Telomeric repeat-binding factor 2-interacting protein 1 OS=Gallus gallus OX=9031 GN=TERF2IP PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003311 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16589
all species →		BRCT_2BRCT domain, a BRCA1 C-terminus domainFamilyInterproscan
PF11626
all species →		Rap1_CTRF2-interacting telomeric protein/Rap1 - C terminal domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001357
all species →		DomainBRCT domainInterproscan
IPR039595
all species →		FamilyTE2IP/Rap1Interproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR021661
all species →		DomainTRF2-interacting telomeric protein/Rap1, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16466
all species →		TELOMERE REPEAT-BINDING FACTOR 2-INTERACTING PROTEIN 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000723
all species →		Biological Processtelomere maintenanceInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0010833
all species →		Biological Processtelomere maintenance via telomere lengtheningInterproscan
GO:0042162
all species →		Molecular Functiontelomeric DNA bindingInterproscan
GO:0070187
all species →		Cellular Componentshelterin complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11113TERF2IP, RAP1; telomeric repeat-binding factor 2-interacting protein 1-DNA replication proteinsko03032deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP