Gene detail

Detailed information of ANN23004-RA in Montipora grisea

Genomic Location: Scaffold_21__1_contigs__length_3404173:2919180...2924003
NR annotation: MXZ25079.1, glutamate synthase large subunit [Caldilineaceae bacterium SB0665_bin_21]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN23004-RA

ATGTCTGAAACTGATCTTACTCCCTCCTATTCCCATAACTCAACGCCTCATTTGCAGCCCAGCCTGCCGGTTAAACAGGGCCTTTACGATCCGCGCTACGAGCACGATGCATGCGGTGTCGGCTTCGTAGTGAACATTAAGGGCCAGAAGTCACATACAATTGTTGCGCAGGGGTTGCAGGTACTCCTCAAACTGGCGCACCGCGGCGCGTGCGGATGCGAGCCGAATACGGGCGACGGCGCCGGCGTCCTCATGCAGATGCCGGACAAGTTCATGCGTAAAGTCGCCGCCGCCGAAGGAATCGAACTGCCGCCGGCGGGTGAATATGCGGTGGGTATGATCTTTCTTCCCCAAAGGGGGGACGAACGGGACCTTTGTGAGCGACTCTTTGAGAAAATCATTCGCGCTGAAGGCCAGAACGTTCTGGGTTGGCGAACAGTGCCGACCGCGAATCAGGAACTGGGTCACACGGCCCGGCTGGGAGAACCGGTCGTACGGCAGATTTTCATCGGCCGCAACCCGGCGCGTCTCATAGGCAATGACGATCTAGCATTTGAGCGCAAACTGTACGTCATCCGCAAGCAGGCGGAGAACCAGATCCGCTACTCCCAGCTTAAGGAAGGCAACTCATTTTACGTCGCCAGCCTTTCCTCGCGCACGGTCATCTACAAAGGTATGCTGATGTCGGTACAGGTCAAGGGTTTCTACCCTGACCTGCTCGACGAAGATATGGAGTCGGCGCTGATGGTGATCCACGCCCGCTTCAGCACCAATACTTTTCCCAGTTGGGAGCGCGCCCACCCCTATCGTTACATGATCCACAATGGTGAGATCAACACACTGCGCGGCAACGAGAACTGGATGCACGCGCGCCAGTCGCATTTCAAGAGCGAGTTGTTTGGCAACGACATAAAGAAAATCTTGCCAATCATTCATGATGACGGCAGCGACTCGGCCAAGTTCGATGAAACGCTGGAGTTCCTCTATCTGTCGGGGCGATCATTGTCACACGCGATGATGATGATGATCCCGGAACCGTGGTCGCAGCATGAAACGATGACCGATGCCAAAAAGGCGTTTTACGAGTACCACAGCACGATGATGGAGCCGTGGGATGGGCCGGCGTCGATCGTCTTTACCGATGGCACGGTTGTTGGCGCAGTGTTGGATCGCAATGGGTTGCGGCCCTCGCGTTACTACGTCACAAAGGACGACATGGTGGTGATGGCGTCAGAGGTGGGTGTGCTGCCGATGGAGCCGGATCGAATCTTGCGGAAGTCGCGTCTGGAACCGGGGCGAATGTTCCTGGTGGACACGAATCAGGGTCGCATCATCTCCGACGAGGAGCTGAAGGAGACGATTGCCTCGGCCCATCCTTACCGCGAGTGGCTGGACCAGCACATGGTCAGCCTGGATAAAATTCCGCAGCCCGATGTCGATGTGCCCAGCGTAGATCACAGCACACTGATTGAACGACAGCAAGTATTTGGTTACACGTTTGAGCAGTTGCGCATACTGCTGGCGCCGATGGCGACTGACGGAGTGGAGGCATTGGGCGCGATGGGTAACGACACGCCGGCGGCGGCCCTATCCAACCATTCGCAGTTGCTGTACAACTATTTCAAACAGCTTTTCGCCCAAGTGACCAATCCGCCCATCGATGCGATCCGCGAGGAGTTAATTACGGCCACTGAGGTGATGCTGGGTACGGAGTTGAACCTTCTTGAAACTAAGCCGGAGAACTGCCGCCAACTTAAGTTGGGTCGCCCGATCATTACGAACAGCGAGTTGGCCAAGATACGCCACATCGAAGGAAGCGGTGCGAAAGGTTTCCGCGCAAGAACTTTCCCGATTCTCTTTGACATCAACGGGGGGGAGGATGCGTTGGACCAGGCGCTTGAGGATCTGTTCCAGGCTGCGACAAAGGCGATTGACGAAGGAGTCAATATCCTCATCCTTTCGGACCGTGGCGTTGGCCCTGGGGTTGCGCCGATCCCCGCATTGCTGGCGACCTCTGGATTGCATCACTATTTGATTCGCAACGAGACGCGCACGCAGGTCGCGCTGGTTGTCGAATCCGGCGAGCCGCGCGAAGTGCATCACCTGTCGTTGCTGATTGGCTACGGCGCGACGGCAGTCAACCCTTATCTGGTGATGGAAACCCTGGGCCAGATGATTGAGAACCGGCTGCTAGTGGGGATCGACCATGACACGGCGGTTTACAACTACGTCAAGGCTGCGATGAAGGGCGTCGTCAAAGTGCTGTCTAAAATGGGCATCTCGACGATACAGAGTTATTGCGGCGCACAGATCTTCGAGGCGCTCGGTTTGAGCCAGCAATTGGTCGACAAGTACTTTACATGGACAGCGACCCGGGTAGAGGGAATCGATCTGCCGGAGATATACGCCGAAGTAAAGATACGCCACGATCAGGCCTATCCTGTGCGACTCTTTTCGCAGGCCCGGGCGAACGGCCACGCACCCAGTGTGTCCGAGCCGGAACAAGTGGCCGAGAACGGGAACGGACATGGGGAAGACCAGCTTCTCGCACCCGGAGGCGACTACCAGTGGCGCAAGGATGGCGAACTGCACTTGTTCAATCCTCGCACGGTACATTTGCTACAGAAGGCCGTGCGGACAGAGGATTACACCTCATTTAAGGCCTACACGCGGGACATTGACCTCATGAACAAGGAGTGGTGCAACCTGCGCGGTCTGTTGGAGTTTGACTTTGACGGTATACCGAGCATACCCATCGAAGAGGTGGAGCCGGTCGAGTCGATCTGCAGACGCTTCAAGAGCGGGGCCATGTCCTACGGTTCGATCAGCAAGGAGACGCATGAGACGCTGGCGATAGCCATGAACCGAATCGGTGGGCGCAGCAATACCGGCGAGGGCGGCGAAGATCCGGCCCGCTACATTCTTGAATCGAACGGTGACTCAAAGAATAGCGCCATCAAGCAGGTGGCCTCGGCCCGCTTTGGCGTGACGAGCAACTATCTCGTAAACGCCAGGGAGTTGCAAATCAAGATGGCACAGGGGGCCAAGCCGGGGGAAGGGGGTCAGTTACCTGGTAAAAAGGTCTATCCCTGGATCGCCGAGGTGCGGCACTCCACGCCCGGGGTCGGTCTGATCTCGCCTCCGCCGCACCATGACATTTATTCGATCGAAGATCTGGCGGAGTTGATCCACGACCTCAAGAACGCCAACCACCACGCCCGCATCAACGTGAAGCTGGTGTCGGAGGTGGGCGTGGGCACAGTTGCGGCAGGTGTCGCCAAGGGCCATGCCGATGTGATCCTGATCAGCGGCCATGACGGAGGGACTGGCGCATCCCCACAGACGAGCATCAAACATGCCGGCCTGCCGTGGGAGTTGGGCGTGGCCGAGACGCATCAGACTTTGTTGATCAACAATTTGCGCAGCCGCGTCGTCGTCGAGACCGATGGCCAACTGAAGACGGGCCGCGACCTTGCAATCGCGGCGCTGTTGGGCGCTGAGGAATACGGTTTTGCCACAAGCCCACTTGTCGCCCTGGGTTGCATCATGATGCGGGTCTGTCACTTGGATACCTGCCCGGTAGGCGTCGCCACACAGAATCCGGCACTGCGGGCGAAGTTCACAGGTGATCCCCAACACGTGGTCAATTTTATGCGTTTCATCGCCCAGGAGTTGCGCGAGTACATGGCGAAACTCGGGTTCCGCACGGTGAACGAGATGATCGGACGCACGGACCGGCTTCAGGTGCGACAGGCGCTCAGCCATTGGAAGGCCCAGGGAATCGACTTGACAGCGATTTTGCACCGGCCGGACGTGCCGGAAGACTGGGGGCGCTACTGCCAGATCGAGCAGGATCATGGTCTGGACAAGGCGCTGGACAATTTGACCTTACTCGAACTTTGCAAGCCAGCCCTCGAAAACCGCGCGGAGGCTGTGCGATGCGCGCACGAGGGCTGGCCGGATGACGGTTCGGAAAGACCCTTGCGCAGAGTGAAGGCGACACTTCCGATCGGCAACACGAACCGTGCGGTGGGCACGATTACCGGCAGTGAGATTACACGCCGCTTCGGCCCGCATGGTCTGCCGGAGGACACTATCCAGTTGCATTTCCAAGGGGCGGCCGGCCAGAGTTTCGGCGCTTTCATCCCCAAGGGTATGACGCTGGAACTGGAAGGCGACAGCAACGACTACTTCGGTAAGGGACTTTCCGGCGGCAAGATTATTGCCTACCCACCGTACGGCTCCACATTCAAGGCCGAAGAGAACACCATAATCGGCAACGTTGCCTTTTACGGCGCCACGAGCGGCGAGGCCTACATACGCGGCATGGCGGGCGAACGCTTCTGCGTACGGAACTCGGGGATGCGTGCGGTCATTGAGGGTGTGGGAGATCACGGTTGCGAATACATGACCGGCGGCCGAGTGGTCGTGCTGGGCCGGACAGGTCGCAATTTCGCGGCGGGCATGTCCGGTGGCATCGCGTATGTATTGGACGAAGAACCGGTGGACGGTGTCAGGTTCAATAATCGCGTCAACTTAGAGATGGTCGAACTGGGAGAGCTGGCTGATCCAGAGGAACGCACTGAGGTACGTGAGATGATGCAACGGCACTATGCCTATACTAATTCGGAAGTGGCCAGAAGGATCCTTGCGGATTGGGATGCATACGTAACCAGGTTTGTAAAGGTACTGCCGAAGGACTATAAGCGAATGCTCCAATGTCTCACCGAAGTTGAAGCCACAGGGCTCGAGGGCGAGGAGGCGATGATGGCGGCATTTGAACGAAATAGCCAGGACTTGGCGGCACGGGTGAGCGGCAACTGA

Transcript

ANN23004-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P55037	Ferredoxin-dependent glutamate synthase 1 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=gltB PE=1 SV=1
P39812	Glutamate synthase [NADPH] large chain OS=Bacillus subtilis (strain 168) OX=224308 GN=gltA PE=1 SV=3
P96218	Glutamate synthase [NADPH] large chain OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=gltB PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002031 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04898 all species →	Glu_syn_central	Glutamate synthase central domain	Domain	Interproscan
PF01645 all species →	Glu_synthase	Conserved region in glutamate synthase	Domain	Interproscan
PF01493 all species →	GXGXG	GXGXG motif	Family	Interproscan
PF00310 all species →	GATase_2	Glutamine amidotransferases class-II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002489 all species →	Domain	Glutamate synthase, alpha subunit, C-terminal	Interproscan
IPR029055 all species →	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR006982 all species →	Domain	Glutamate synthase, central-N	Interproscan
IPR036485 all species →	Homologous_superfamily	Glutamate synthase, alpha subunit, C-terminal domain superfamily	Interproscan
IPR002932 all species →	Domain	Glutamate synthase domain	Interproscan
IPR017932 all species →	Domain	Glutamine amidotransferase type 2 domain	Interproscan
IPR050711 all species →	Family	Electron transfer and nitrogen metabolism enzyme	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11938 all species →	FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0015930 all species →	Molecular Function	glutamate synthase activity	Interproscan
GO:0006537 all species →	Biological Process	glutamate biosynthetic process	Interproscan
GO:0016638 all species →	Molecular Function	oxidoreductase activity, acting on the CH-NH2 group of donors	Interproscan
GO:0019676 all species →	Biological Process	ammonia assimilation cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00265	gltB; glutamate synthase (NADPH) large chain	EC:1.4.1.13	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.