Genomic Location: Scaffold_21__1_contigs__length_3404173:2924047...2925546
NR annotation: MXZ42398.1, glutamate synthase subunit beta [Caldilineaceae bacterium SB0666_bin_21]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN23005-RA |
| Transcript |
| ANN23005-RA |
| Protein |
| ANN23005-RA |
| UniProt accession | Description |
|---|---|
| O34399 | Glutamate synthase [NADPH] small chain OS=Bacillus subtilis (strain 168) OX=224308 GN=gltB PE=1 SV=2 |
| Q03460 | Glutamate synthase [NADH], amyloplastic OS=Medicago sativa OX=3879 PE=1 SV=1 |
| Q0DG35 | Glutamate synthase 2 [NADH], chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0555600 PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002087 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07992 all species → | Pyr_redox_2 | Pyridine nucleotide-disulphide oxidoreductase | Domain | Interproscan |
| PF14691 all species → | Fer4_20 | Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR023753 all species → | Domain | FAD/NAD(P)-binding domain | Interproscan |
| IPR036188 all species → | Homologous_superfamily | FAD/NAD(P)-binding domain superfamily | Interproscan |
| IPR006005 all species → | Family | Glutamate synthase, NADH/NADPH, small subunit 1 | Interproscan |
| IPR028261 all species → | Domain | Dihydroprymidine dehydrogenase domain II | Interproscan |
| IPR051394 all species → | Family | Glutamate Synthase | Interproscan |
| IPR009051 all species → | Homologous_superfamily | Alpha-helical ferredoxin | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43100 all species → | GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0006537 all species → | Biological Process | glutamate biosynthetic process | Interproscan |
| GO:0016639 all species → | Molecular Function | oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor | Interproscan |
| GO:0051536 all species → | Molecular Function | iron-sulfur cluster binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00266 | gltD; glutamate synthase (NADPH) small chain | EC:1.4.1.13 | Alanine, aspartate and glutamate metabolism | ko00250 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
