Gene detail

Detailed information of ANN23196-RA in Montipora grisea

Genomic Location: Scaffold_29__1_contigs__length_1564183:287059...289662
NR annotation: MAZ86116.1, DNA mismatch repair protein MutS [Cellvibrionaceae bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN23196-RA

ATGATGCAGCAGTACCTGAAGATCAAGGCTCAACACCCCCACGAGTTGGTGTTTTATCGCATGGGTGATTTCTACGAGCTGTTTTATGACGATGCCAAAAAGGCTGCGGAACTGCTGGATGTTACTCTCACTTCTCGAGGTAAGTCTGGTGGGGAACCCATTCCCATGGCCGGCGTCCCGTTTCACGCGGCCGACGGCTACCTGGCCAGGCTGGTTCGCAAAGGCGTATCTGTCGCCATCGCTGAACAGATTGGAGACCCTGCGACCAGCAAGGGGCCCGTTGAAAGGAAAGTGGTACGCATTGTGACCCCGGGCACGGTGAGCGACGAGTCACTGCTGGACGAAAGCCGCGATAACCTATTGGTGGCGCTATGCGTGCTGGAAGAAACTTTCGGTATTGCCAGCCTGGACATTGGGTCCGGGCGCTTTCAGGTATTGGAAGTTGAAGGACTGGACACGGCCCTGGGCGAATTGCAACGACTGAATCCAGCCGAACTGTTGATATCAGAGGAGCTGGCTGGCATTGATCCGCTGGAACAAAGAGCAGGCTTGAGAAGACTCCCGCCCTGGGAATTTGAGTTGGAAACAGCTCAGCGTTTGCTTACCCAACAATTTGGCACCCAGGATCTCGCAGGATTTGGTTGTGAACACATGCATGTGGCGCTGGCCGCCGCAGGCTGCCTGTTGGCCTACGCCCAGGAAACCCAGCGCACCGCCCTGCCCCATATCAATCGCATTAGCAGTGAAAACCGCGATGAAGCGGTAGCAATGGACGCTGCCACCCGCCGCAACCTTGAGCTGGATATCAATCTCAATGGCGGCGAGGAGAACACGCTTTTCGATGTGCTGAACACCGCAGCCACCGCCATGGGCAGTCGCCTGTTGCGCCGTTGGTTAAACAGACCCCTGCGCGACATCCACACATTGCAATCCCGGCAAGATGCCATTGCCTGTCTACAGAACAACTATCAATTTGAACCCGTGCATCAGTGCCTGAAACGCATCGGCGATCTGGAACGTATTCTGGGGCGTGTTGCGCTGCGATCTGCCCGGCCAAGGGACCTGTCACGGCTGCACATGTCTCTGGCCAGCTATCCCGAACTGCAGGGCTTGCTCAAAGATTGCGATGTCACCCACCTTCAGGCACTGGCAAAGGACATAGGCACCTTTCCCGATCTGGAAGACCTGTTGGGAAGAGCCATCATCGAGAATCCTCCAGTGGTGATACGTGATGGTGGCGTAATCGCCGAAGGGTACGATGCGGAGCTGGACGAGCTCCGCGGCATCAGCACCAATGCCGGCCAGTTTTTGGTTGATCTGGAAACCCAGGAGCGCGAGCGCACTGGCATCAGCACCTTGAAGGTGGGATATAACCGCGTGCACGGTTACTACATTGAAATCAGTCGCGCCCAGTCAGAGAAAGCACCAACCGAATATATACGTCGCCAAACGCTGAAAAATGCCGAGCGCTTTATTACCCGGGAATTAAAAGAGTTTGAAGATAAGGCGCTTTCCGCTAAAAGCCGTGCCCTGAGCCGGGAAAAAGCGCTCTATGAAGAGATCCTGGAAATTCTGAATGAAAGCCTGCTGGCTCTGCAAATTGCTGCATCTGCAGTATCCGAGTTGGATGTACTGACAACACTCACTGAGCGCGCAGACACGCTGAGTTTTAGTCGTCCTGAGCTCACCGATAAAGCAGGAATCCACTATATTGCAGGCCGTCACCCAGTGGTGGAAAAGGTGTCTGACCACCCCTTTGTGCCTAACGACCTGAATCTAAACGACGATCGCAGGATGCTCATTGTCACCGGTCCGAACATGGGCGGTAAATCGACCTACATGCGTCAAACTGCTTTGATAACACTGCTCGCGCACGTTGGCAGCTATATTCCGGCACAGTCTGCCCGAATCGGCATTGTGGACCGTATATTCACGCGCATTGGTTCTTCGGATGACCTGGCTGGCGGCCGCTCTACCTTCATGGTGGAGATGACAGAAACCGCCAACATTCTGAACAATGCCAGCGACCGCAGCCTGGTACTGATGGACGAAATTGGCCGTGGCACCAGTACCTTCGATGGACTCTCCCTCGCTTGGGCTTGCGCGGTCCAGCTGGCAGAAAAAGTCAGGGCATTCACCCTGTTTGCCACCCATTATTTCGAACTTACCGAATTACCTGATTCTCACCCAGGTGTTGCCAATGTGCACCTGGATGCGACCGAGCATAACGACAATATTGTCTTCCTCCACCATATTCAGGAGGGTCCCGCCAGCAAGAGTTATGGCTTACAGGTGGCAAAACTGGCGGGGATACCTGCTGATGTGGTCTCACTGGCACAGGAACAACTACAACAACTGGAAGGGCAACACAGCGATCGCCCTCGGGTGGTTAGGCCAAATCCAGCTCCATTTCAAATTCCAGCACCAGCTCCAGCACAAAGGCAGCCTCACACTCAAGCAGCAGACCCGCTTCAGGGAGACATGTTTACAGCCCAGGCCGCACATCCGGCGGTGAGTGCCCTGGATGAACTCGATCCCGATGAACTCAGCCCACGCCAGGCACTGGAACAGCTATATGCGCTAAAAGCGCTCTCTAAACAGTAA

Transcript

ANN23196-RA

Protein

Uniprot

Uniprot term	Description
Q21LB1	DNA mismatch repair protein MutS OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) OX=203122 GN=mutS PE=3 SV=1
C5BMR5	DNA mismatch repair protein MutS OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) OX=377629 GN=mutS PE=3 SV=1
A1U2E8	DNA mismatch repair protein MutS OS=Marinobacter nauticus (strain ATCC 700491 / DSM 11845 / VT8) OX=351348 GN=mutS PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05192	MutS_III	MutS domain III	Domain	Interproscan
PF00488	MutS_V	MutS domain V	Domain	Interproscan
PF05188	MutS_II	MutS domain II	Domain	Interproscan
PF05190	MutS_IV	MutS family domain IV	Domain	Interproscan
PF01624	MutS_I	MutS domain I	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036678	Homologous_superfamily	MutS, connector domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR007696	Domain	DNA mismatch repair protein MutS, core	Interproscan
IPR000432	Domain	DNA mismatch repair protein MutS, C-terminal	Interproscan
IPR045076	Family	DNA mismatch repair MutS family	Interproscan
IPR016151	Homologous_superfamily	DNA mismatch repair protein MutS, N-terminal	Interproscan
IPR007860	Domain	DNA mismatch repair protein MutS, connector domain	Interproscan
IPR007861	Domain	DNA mismatch repair protein MutS, clamp	Interproscan
IPR005748	Family	DNA mismatch repair protein MutS	Interproscan
IPR007695	Domain	DNA mismatch repair protein MutS-like, N-terminal	Interproscan
IPR017261	Family	DNA mismatch repair protein MutS/MSH	Interproscan
IPR036187	Homologous_superfamily	DNA mismatch repair protein MutS, core domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11361	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0030983	Molecular Function	mismatched DNA binding	Interproscan
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0140664	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03555	mutS; DNA mismatch repair protein MutS	-	DNA repair and recombination proteins	ko03400	deepkoala