Genomic Location: Scaffold_29__1_contigs__length_1564183:825735...828656
NR annotation: MBR9911844.1, SLC13/DASS family transporter [Gammaproteobacteria bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN23233-RA |
| Transcript |
| ANN23233-RA |
| Protein |
| ANN23233-RA |
| UniProt accession | Description |
|---|---|
| Q49YW0 | Sodium-dependent dicarboxylate transporter SdcS OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=sdcS PE=3 SV=1 |
| Q2YU56 | Sodium-dependent dicarboxylate transporter SdcS OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) OX=273036 GN=sdcS PE=3 SV=1 |
| Q6GFE0 | Sodium-dependent dicarboxylate transporter SdcS OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=sdcS PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005213 (this species only) · gene tree & orthology |
| Ubiquitin family | E1|ThiF|ThiF · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00899 all species → | ThiF | ThiF family | Domain | Interproscan |
| PF05175 all species → | MTS | Methyltransferase small domain | Domain | Interproscan |
| PF00939 all species → | Na_sulph_symp | Sodium:sulfate symporter transmembrane region | Family | Interproscan |
| PF17827 all species → | PrmC_N | PrmC N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR004556 all species → | Family | Methyltransferase HemK-like | Interproscan |
| IPR001898 all species → | Family | Solute carrier family 13 | Interproscan |
| IPR029063 all species → | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR035985 all species → | Homologous_superfamily | Ubiquitin-activating enzyme | Interproscan |
| IPR000594 all species → | Domain | THIF-type NAD/FAD binding fold | Interproscan |
| IPR007848 all species → | Domain | Methyltransferase small domain | Interproscan |
| IPR002052 all species → | Conserved_site | DNA methylase, N-6 adenine-specific, conserved site | Interproscan |
| IPR040758 all species → | Domain | Release factor glutamine methyltransferase, N-terminal domain | Interproscan |
| IPR019874 all species → | Family | Protein-(glutamine-N5) methyltransferase, release factor-specific | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10283 all species → | SOLUTE CARRIER FAMILY 13 MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006479 all species → | Biological Process | protein methylation | Interproscan |
| GO:0008276 all species → | Molecular Function | protein methyltransferase activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0022857 all species → | Molecular Function | transmembrane transporter activity | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| GO:0008641 all species → | Molecular Function | ubiquitin-like modifier activating enzyme activity | Interproscan |
| GO:0008168 all species → | Molecular Function | methyltransferase activity | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0032259 all species → | Biological Process | methylation | Interproscan |
ANN23233-RA.Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
