Gene detail

Detailed information of ANN23314-RA in Montipora grisea

Genomic Location: Scaffold_29__1_contigs__length_1564183:1495565...1499523
NR annotation: WP_166990696.1, aminomethyl-transferring glycine dehydrogenase [Pseudomaricurvus alkylphenolicus]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN23314-RA

ATGAGCGAGTTGCAGACGACCCCATACAACGCAATGCATCAGGCTGTAGGGGCCAAATTAGTGCCTTTTGCGGGCTATGAAATGCCGGTGCAATACCCTGAAGGCATCAAAAGTGAGCACTTGCATACTCGCAGTGCGTCGGGCTTGTTCGATGTCTCTCACATGGGGCAGGCTTTGCTAAAAGGACCCTCGATAAAGGCGGATCTTGAGCGCTTGTTGCCGCTGGATCTGGACCTGCTCAATCCTGGACAGCAGGTGTATACCTTTTTACCGAACGAAGATGGTGGGATTGTCGACGATCTGATTGTCACTTGCTGGGACGACGCGACTTACTTCGCCGTATTCAATGCCGCTTGCAAAGCCAAGGACATCGCGCATTTCGAAAAATACCTCTCTTCCGACAATCAACTGGAGCTGCTGGACGACCGCGCGCTGCTGGCCTTGCAGGGGCCAAAATCTGTAGATGTACTCAAGGCGCTGGTACCTGGCATAGAACAGTTGACCTTTATGCATGGTAAGGCGGCGATGCTGGCGGGAGCTGAATGCTATATCACCCGTTCCGGCTACACCGGCGAAGACGGTTTCGAGATTTCCATACCAGCAGTGCAGGCCGAAGCCGTGGCCGATGCCCTGCTGGCAGAAGAAGCCGTGAAGTGGATTGGTCTGGGTGCGCGCGATTCACTGCGCCTGGAGGCCGGATTGTGTCTTTACGGCCACGATATGGACGACAATCGTTCCCCTGTCGAAGCCTCGCTGATGTGGGCCATCGCTAAAAATCGTCGTGCGGGAGAGGCGAAAGCCGGCGGCTTTATCGGAGCTGATAACATCTTTGCCCGGCAACAGCAGGGCGCTACTGAGAAACGTGTCGGACTGATAGTCGATGGCAAAGCGCCCGTGCGTGAGGGCAGTGAGCTTGTGGATGCTGAGGGCAACATCATTGGTGTGGTCACCAGCGGCGGTTTCGCGCCCACCCTGGGAGCGCCGGTAGCCATGGGTTACGTAGCCAGTGAATTTGCCTCCATTGGCACGCAGGTATTTGCCATGGTGCGTGGACCATCCTCAGAAGATCAGCAACGCATGCTTGAAAGCATGGGCTACAAAAACAGGGAAGCCTTTATCAATGCCCTGATTCCGGACGATATCCGTCTGCCGGGGCCACTGGCGATGGACGATGCGGTTAGCGAAGTCGAAGCGCTGCGTCTGTTGCGGGCGATTGCCGACAAAAATCAGGTGCTGCGCTCCTTTATCGGCCAGGGTTATTACAACACCCATACACCCAAAGTCATCCTCCGAAACGTGATGGAGAATCCCGCCTGGTACACTGCCTATACCCCTTACCAGCCGGAAATCTCTCAGGGTCGCCTGGAAGCTCTGCTGAATTACCAGACCATGGTGTGTGACCTCACCGGTATGGAGCTGTCCAATGCCTCCATGCTGGACGAAGCAACCGCTGCAGCGGAAGCCATGGCATTGTGTCAGCGTATGTCGAAGTCCCGCGCTATGACATTTTTTGTTGACGAAGACTGTCTGCCACAAACTATTGATGTGGTACGTACACGGGCGGAACCCCTCGATATCGAGATCGTTGTGGGTAATCCCTTTAGTGATCTGAACGCAGATGAAGTTTTTGGTGTGCTATTACAGTACCCGGGCGCGAGTGGTCAGATCAATGACTACCGTCAAGTGATAGAACAAGTGCATGCCGCTAAAGGCCTGGTGGCCATGGCTGCTGATCTGCTGGCGCTCACCCTACTGACGCCGCCCGCAGAATTGGGTGCAGATGTTGCCATCGGTTCTTCTCAGCGTTTTGGCGTGCCTCTGGGTTACGGCGGACCGCACGCCGCTTACATGGCGACACGGGAAAAATTCAAGCGCTCCCTGCCTGGGCGCCTGGTGGGTCGCTCATTAGACAGTCAGGGTAACGAGGCCTTGCGTCTGGCTTTGCAAACTCGCGAGCAACATATTCGCCGCGAAAAAGCCACGTCCAATATCTGTACTGCGCAGGTGTTGTTGGCTGTGATGGCAAGCATGTATGCGGTGTATCACGGCCCGCAGGGTTTACGTGCTATTGCAGAAAAAATATACGCCAGAACCACAAGTCTGGCGGAAGCGCTGAAGGCCAGTGGTTTTGATATTGCCAACGACAGCTGGTTCGATACGCTCACCGTGAACACCGGTGATAAGACTGAAATCATCCATGCAAGCGCGCTGAGTTTTGGCATTAATCTGCGTCGTATCAGTGAATCGCAATTGGGCCTGTCGCTGGATGAAACCGTTGAAGACGAAGACCTGGCGGCCATCCTTTCCAGCTTTGGTGTCGAGAAGGACGTGTTGAGTGAAACTGAAAGCGGCGGGCTGTCAGATTCTCTCAAGCGTGACAGTGAATACCTCACGCATCCGGTATTTAACAGTTACCACTCAGAAACAGAAATGCTGCGCTATCTGCGCGGCCTGGCAGATAAGGATTTGGCACTGGATCGCGCCATGATTCCGCTGGGTTCCTGCACCATGAAACTCAACGCTACTTCTGAAATGATTCCGGTCACCTGGCCGGAATTTGGCGAGATGCATCCTTTTGTGCCTGCGGATCAGAGCAAGGGTTATCAACTGCTGGACCGTCAGTTGAACACCATGATTTGTGAAGCCACCGGCTACGACGATATTTCCTTTCAGCCCAATGCAGGCTCACAAGGGGAATACGCGGGGCTGTTGGCCATTCGCGGTTATCATGCTTCCCGTGGCGAGGCCCATCGCAATATCTGTTTGATTCCCAGTTCTGCTCACGGCACTAACCCTGCATCTGCGCAAATGTGCGGCATGAAAGTGGTGGTAACTGCCTGCGACAGCAACGGCGAAGTGGACATGGCAGACCTGCGCGCGAAGGCGGAGCAGCACAGTGACAATCTCGCTGCCATTATGATCACCTATCCTTCTACGCACGGCGTATTTGAAGAAAATGTGCGGGAAATTTGCGAGTTAATCCACGGTCACGGCGGTCAGGTCTATATTGATGGCGCCAACTTCAATGCCATGGTCGGTCTGTGCAAACCCGGAGAATTTGGCGGCGATGTGTCTCACCTGAATTTGCACAAAACCTTCTGTATTCCTCATGGTGGGGGTGGCCCTGGTGTTGGTCCGGTCGCGGTTAAATCCCATCTGGCGCCTTTCCTGCCAGGTCACGGACTTATGGAAAACAAACAGCATGCCGTATCGGCTGCACAGCTGGGCAGCGCCAGCATTCTGCCAATCACCTGGATGTACATCACCATGATGGGTGGCAGCGGACTGCAGTCAGCAACCGAAGTTGCCATGCTCAACGCCAACTATATTGCCCATCGTTTATCGGCCGCTTATCCCATTCTGTACACGGGGCAGCAAGGCCTGGTGGCCCATGAGTGCATTGTGGATTTACGCCCCATTAAAGAAGAAACCGGTGTCGATGTGGAAGACCTTGCCAAGCGTCTGATCGATTACGGATTCCATGCACCCACCATGTCCTTCCCGGTGGCCGGCACATTAATGATTGAACCAACGGAAAGTGAAAGCCTTTATGAGCTGGATCGATTCTGCGACGCGCTGTTGAAAATTGCCGAAGAGATCGACGCTGTCAGACAAGGGCAAGTCGCACTGGGAGACAGTCCTCTGGTTAATGCTCCTCATACTGTAGAAATGGTATCTGCGGATGAATGGAACAAACCCTACAGCCGTTCACAGGGCGGTTTCCCGCTGGAAAGTTTGCGCAAAAGCAAATACTGGCCGCCGGTTGGCCGCATCGACAATGTGTATGGTGACCGCAACCTCGCCTGTAGTTGTGCACCCATTGAAGCTTATATGGAGGTGTAA

Transcript

ANN23314-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4ZXH2	Glycine dehydrogenase (decarboxylating) OS=Pseudomonas syringae pv. syringae (strain B728a) OX=205918 GN=gcvP PE=3 SV=1
Q48ME3	Glycine dehydrogenase (decarboxylating) OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) OX=264730 GN=gcvP PE=3 SV=1
Q88P65	Glycine dehydrogenase (decarboxylating) 1 OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=gcvP1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002709 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02347 all species →	GDC-P	Glycine cleavage system P-protein	Domain	Interproscan
PF21478 all species →	GcvP2_C	Glycine dehydrogenase, C-terminal domain	Domain	Interproscan
PF08669 all species →	GCV_T_C	Glycine cleavage T-protein C-terminal barrel domain	Domain	Interproscan
PF01571 all species →	GCV_T	Aminomethyltransferase folate-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020581 all species →	Family	Glycine cleavage system P protein	Interproscan
IPR029043 all species →	Homologous_superfamily	Glycine cleavage T-protein/YgfZ, C-terminal	Interproscan
IPR049315 all species →	Domain	Glycine cleavage system P-protein, N-terminal domain	Interproscan
IPR049316 all species →	Domain	Glycine dehydrogenase, C-terminal domain	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR003437 all species →	Family	Glycine dehydrogenase (decarboxylating)	Interproscan
IPR013977 all species →	Domain	Glycine cleavage T-protein, C-terminal barrel domain	Interproscan
IPR006222 all species →	Domain	Aminomethyltransferase, folate-binding domain	Interproscan
IPR006223 all species →	Family	Glycine cleavage system T protein	Interproscan
IPR027266 all species →	Homologous_superfamily	GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11773 all species →	GLYCINE DEHYDROGENASE, DECARBOXYLATING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004375 all species →	Molecular Function	glycine dehydrogenase (decarboxylating) activity	Interproscan
GO:0006546 all species →	Biological Process	glycine catabolic process	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005960 all species →	Cellular Component	glycine cleavage complex	Interproscan
GO:0016594 all species →	Molecular Function	glycine binding	Interproscan
GO:0019464 all species →	Biological Process	glycine decarboxylation via glycine cleavage system	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0006544 all species →	Biological Process	glycine metabolic process	Interproscan
GO:0004047 all species →	Molecular Function	aminomethyltransferase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00281	GLDC, gcvP; glycine cleavage system P protein (glycine dehydrogenase)	EC:1.4.4.2	Lipoic acid metabolism	ko00785	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.