Gene detail

Detailed information of ANN23368-RA in Montipora grisea

Genomic Location: Scaffold_25__1_contigs__length_2167126:894258...896057
NR annotation: MCE2431443.1, RluA family pseudouridine synthase [Candidatus Latescibacteria bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q45480	Uncharacterized RNA pseudouridine synthase YlyB OS=Bacillus subtilis (strain 168) OX=224308 GN=ylyB PE=3 SV=3
P50513	Ribosomal large subunit pseudouridine synthase D OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 GN=rluD PE=3 SV=2
O67638	Uncharacterized RNA pseudouridine synthase aq_1758 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=aq_1758 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003100 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01479 all species →	S4	S4 domain	Domain	Interproscan
PF00849 all species →	PseudoU_synth_2	RNA pseudouridylate synthase	Family	Interproscan
PF01252 all species →	Peptidase_A8	Signal peptidase (SPase) II	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020103 all species →	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR001872 all species →	Family	Peptidase A8, signal peptidase II	Interproscan
IPR037187 all species →	Homologous_superfamily	DksA, N-terminal domain superfamily	Interproscan
IPR002942 all species →	Domain	RNA-binding S4 domain	Interproscan
IPR050188 all species →	Family	RluA Pseudouridine Synthase	Interproscan
IPR006225 all species →	Family	Pseudouridine synthase, RluC/RluD	Interproscan
IPR006145 all species →	Domain	Pseudouridine synthase, RsuA/RluA-like	Interproscan
IPR006224 all species →	Conserved_site	Pseudouridine synthase, RluA-like, conserved site	Interproscan
IPR036986 all species →	Homologous_superfamily	RNA-binding S4 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21600 all species →	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001522 all species →	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0009451 all species →	Biological Process	RNA modification	Interproscan
GO:0009982 all species →	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN23368-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.