Gene detail

Detailed information of ANN23587-RA in Leptoseris scabra

Genomic Location: Scaffold_1__1_contigs__length_42512999:23437585...23452777
NR annotation: XP_022785746.1, structural maintenance of chromosomes protein 1A-like [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ANN23587-RA

TTACTGTGAACTGCCTGAGAGCAGATCCTGAGATGTTCCTTCCACTGGATGGTATTCAGGTCAAGCCTGTTAATGAAAAGCTTAGGCAAATTGGTGGCTCTGCTAAGCTAGTCATTGATGTCATTAAATTTGATCCACCAATTATCAAGAAAGCTTTGCAATTTGCCTGTGCCAATGCACTTGTTTGTGATGGAATGGAAGAGGCAAGGAAGTTAGCATTTGGAGGAGCTGAGAGAAAGAAGACAGTCTCCTTGGATGGAACACTGTTCCAGAAGTCTGGGGTTATTTCTGGTGGAGTAAGTGATCTGAAGGCCAAGGCCAGACGGTGGGATGAAAAGCAAGTGGATGGATTGAAACGCAAACGTGGTAGCCTTTTGACAGAATTAAAGGATCTGTCAAAGCATCGTAGAAAAGAGCCAGAATTGCAAAACTTGAGGTCTCAAATTGATGGCCTTGAGCATCGGCTGAGGTACTCAACAAAGGACAAAGAAACTACGGAGAAGCAAACATTGGGTGAGATTTCCAAGGAACTGAAGGTCATCAAAAAAGAACTGGACAGCTTAGAGCCAAAAAGGGAGAAATTGCTGCTTTCAATGGCTGCTCGAAGTGAGGAGATCACCAACACAGAGAAAAGGATGAACAGGGTTGAAGACCAAGTTTTTAGAGGATTCTGTGAGCAAATCAATGTGGAGAATATTAGGCAATATGAAGAAAAGCAGCTCAAAGCTCAACAAGAGAGAGCTCAGCGCCGTCTGGAGTTTTCTAACCAGGAGTCTCGCCTAATGAATCAGCTGGAGTATGAAAAAGGCAGAGATACCAAAGGTCAACTAAAGAAACTTGAGGAAAGTATGGCTGCTGATGAAGCCGAGATTGAGAAGCTCAAAGGGGAAGAGAAAGAGAAGCTGAAGATTATTGAGAAAGAAACAAGTGATCTGGAAAAAATGCGCCTGGAGAAATCAGCAAAGAAGTCACAGATTGATGAAAAGGACTTGGAAATTAAAGAAGTGAAGAAAGGTTTGATGCATCATGTGAAGGAAGTAACAGCACTTCAGAAACAAATGACTGCAATGGAGACTCAGCTAGAACAAAAGAAAGCAGATCGTCACAGTCTCCTGAAGTCTTGCAAGATGGAAGACATCTTCCTTCCCTTTAAGAAGGGAGGAATGAATGACATCGATCTAGGAGAACCTTCAGCCAGTCAGCCCGAGTCGTCGAGTCAGGATTCATCCTCTATGGAGGTTGACAGCACAAGCACACAGGGCGCAAAGATAACCTATGAGAGGGAAGCTAATTTAGTAATTGACTATTCTTCACTTGGTCGGAGTTTAAAACAGCTTGAAGACGCTCTGGAGATTCGGAACACAATGAATGAGCTTTCAAACAAGGTGACCAAACTACAAACAACACTGCAAAGGATTCAGGCTCCTAACATGAAGGCACTTGAAAAACTTGATGGTGTAAGTAGCCGTTTTCAAGAAACAAGTGCTGAGTTTGAGCAAGCACGAAACAAAGCAAGAAAGGCAAAGATTGAATTTGAGACTGTCAAGAAAAATAGATATGATCGCTTCATGGATGCATTTGAACACGTTTCACAGAGGATAGACGATATTTACAAGGAAATTGCCAATAATCCGAGTGCACAAGCATTTCTTGGTCCTGAAGATGCTGAGGAGCCATACCTCGGAGGAATTAATTACAACTGTGTAGCACCAGGAAAAAGATTTCGACCGATGGACAACTTGTCCGGTGGTGAAAAGACTGTAGCAGCTCTTGCTCTGCTCTTCAGTATTCACAGCTACCAACCTGCACCATTTTTTGTTTTGGATGAAATAGACGCAGCTCTCGACAATACCAATATAAATAAGGTGGCACGGTACATCATCAACGAGACTAGAGAGCACTTTCAGTGCATCGTTATTTCCCTGAAGGAAGAGTTCTACACCAGAGCAGAAGTTCTTATTGGAATCACTGCGGAAAAAGTGTTGAAATACACCCGCCTGACAAGGATTGCACTG

Protein

Uniprot

Uniprot term	Description
O93308	Structural maintenance of chromosomes protein 1A OS=Xenopus laevis OX=8355 GN=smc1a PE=1 SV=1
Q9CU62	Structural maintenance of chromosomes protein 1A OS=Mus musculus OX=10090 GN=Smc1a PE=1 SV=4
O97593	Structural maintenance of chromosomes protein 1A OS=Bos taurus OX=9913 GN=SMC1A PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06470	SMC_hinge	SMC proteins Flexible Hinge Domain	Domain	Interproscan
PF02463	SMC_N	RecF/RecN/SMC N terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR010935	Domain	SMCs flexible hinge	Interproscan
IPR003395	Domain	RecF/RecN/SMC, N-terminal	Interproscan
IPR036277	Homologous_superfamily	SMCs flexible hinge superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18937	STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0007062	Biological Process	sister chromatid cohesion	Interproscan
GO:0008278	Cellular Component	cohesin complex	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0051276	Biological Process	chromosome organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06636	SMC1; structural maintenance of chromosome 1	-	Chromosome and associated proteins	ko03036	deepkoala