Gene detail

Detailed information of ANN23623-RA in Leptoseris scabra

Genomic Location: Scaffold_1__1_contigs__length_42512999:24116470...24146840
NR annotation: CAH3127398.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN23623-RA

ATGGCTGGCGCCGGTGCAAGTGAAAATGACGAGCACAGTGCTCCAGTCGAGAAAGTGGCCAACATTGAAAGGCAAAAAACGGAAATAACAGAAGAAATGAAGAAACCTTTACGTAAAGGTGATACCTGGTATCTTGTTGACTGTCGCTGGTTTAAACAATGGAAGAAGTTTGTTGGATTTGATACATGGGATCAGTTTGGAGTTGGAGATCAGTCAAGCAATCCTGGTCCTTTGGACAATTCGAGTCTGTTTTCAGCTGATGGCTGTACTCTAAAGGAACATCTGATAGACGAGCTTGATTATAACCTTCTACCTGAAGAAGCATGGTCTAAGCTTGTGTCATGGTATGGGATGACATCAGATCAACAGGCTCTACAAAGGAAAGTGGTGGTACATGGCATGTATGTCAAAAACTGTAAGGTTGAGGTATACCTGATGGAGTTCAAACTCTCACAGCATTCAGACCCGAAAACCTTGATTACAAAGCAGTTCAGCAAAGGAGATACTATTGGTGATGTTATGTCAGAAATGAAAACGACTTTCAATATTCCAGAGGACACTGAAACCCGAGTATGGAACAAGTACATGAGTAACTCATGTGAACTTCTCACTAACATGGAAAACACTGTGCAGGATGCTGGTCTCTATCAGGGACAGGTTCTCATTATAGAGCAAAAGAATGAAGATGGTACATGGCCACGTCAAACAAGGCAAAGCTCTTACTCATCTTCGACATGGCTTGGCAGCTCAGACTGCTGTTTATATTACACCTCTCTCAGATACAGCAGTTACAGCTCACGGAGTTCATGGGGATATGATGGACTAAGGTCAAGCAGTTCCTTACCAGGACTTACAGGACTTGGAAATCTTGGAAATACTTGTTTCATGAACTCTGCTCTGCAATGCTTAAGTAACACTGTTCCACTGACCAAATACTTTTTGTCTGGAAACTATAAAGATGAGCTGAATCGGGATAACCCTTTGGGGATGAGAGGTGAGATTGCTAATGCATATGCAGGGCTTCTCAATCAAATCTGGAAAGAACAATATAGCTCAGTGGCTCCAAGACAATTCAAGATGCAAGTTGGGCGGTTTGCACCACAGTTTTCTGGTTATCAGCAGCAGGATTCTCAGGAGCTTCTTGCTTTCTTGTTGGATGGCCTTCATGAGGATTTAAACCGTGTTAGAAAGAAGCCTTATGTAGAGCTAAAGGATGCTGATGGCCGCCCTGATGAAGTTGTTGCCAAGGAATCATGGCACAATCACCTGCAGAGGAACAACTCCATTATTGTGGACATATTTCATGGACTTTTCAAATCCACTCTGGTTTGTCCTGATTGCAGTAAGGTTTCTGTGACATTTGATCCATTCTGCTACCTTTCCCTGCCGCTGCCAGTCAAAAAGGAGAGAAGCCTTGATATATTTCTGGTGCGAAGTGATCCTCTTCGGAAACCAACCCTGTATAAATTAACTGTACCAAAGATGGGTAATGTTTCTGATTTACTTGATGTTTTGTCAAAAGAAACCAAGATTCCTAAAGACAAGGAACCATTGAATATGAGGACTGGGGTAAGACAAGGCTGCCTGCTATCTCCCTTGCTGTTTCTGGTCGCCCTGGATTGGGTGACAAGGACAGCCTTTGACAGAAAGAGAGGTATTCAGTGGACCTTTACGACATCGTTAGAAGACCTTGACTTTGCCGATGATCTGGCCCTACTGTCGCACAGAATACAGGATATGAGGGATAAGACACGGGCCTTGGAGGTACAAAGTGCGAAGGTAGGCTTGAAGATCAATGCCACCAAGACAAAGCTGATGCGTATTGGTACCAAACGTGACGATGGTGTGTCGGTCGCTGGGGAGCGGGTTGAAGAAGTGGACGAGTTCACATACCTTGGGAGCATTGTAAGCAAGAAGGGAGGCACTGATGAGGACATTCAGGCACGAATTGGAAAGGCAAGGCAGGCATTTGCGATGCTGAGACCAATATGGCGATCCAAGGCACTAACAACCAAGACCAAGCTGAGAGTCTTTGGGTCAAATGTGAAGGCGGTGCTCTTGTATGGTTCTGAAACTTGGAGGCTGACCAAGGGACTGGAGCAGAAGCTGCAAGTGTTCATCAATAAGAGCCTGAGGAACATTTTGCGGATTTGGTGGCCTAGAAAAATCAGCAACAAGGAGCTTTGGAGACAAACAGGGCAACGACCGATAGAGGAAGAGATAAGACAGCGAGCTTGGGGTTGGATCGGCCACACGCTGAGGAGACCAGATGGACATGTAGTCAAGAGGGCACTGGAGTGGAACCCACAGGGGAAGCGAAAGAGAGGGAGACCCCAGCAAACCTGGAGACGCACGAGAATGGCAGAGTTGGCGGCGAAACATCTTACGTTGAACGAGGCAAAAGGCACTGCACAAAATAGGATGGTGGTTACAGACGTCTACAACCACAGGTTTCACAAGGTGTTTGCTTTAACTGAATCACTGACCCAGATTCTTGACAGAGACGACATATTTGTTTATGAACTGCTACAAAGCAAATCTGAGAATGATGATGATGACAATTTCATTGCGCTTCCAGTGTACCAAAGAGAGAAAAGGGCACGGCTGACTTCTTACAGTTACTCAAGTTCAAATAAAGCATTGTTTGGACTGCCACTGATAATTTCTGTTCCAAAGAAAGATTTAACTTACCAGGCACTGTACAACATCTTGTTGGATAGAATGAAGCGCTTTGTTCGGTTGCCTGAGGAGGAAGTAGAAATGGGAATCAAAAATGAAGAAGTAGGCGAGGAAGATGTTGAGATGAGTGAGGATTTGAAAGATGGCACTGAAAATGAGGATGCTGAGGAGAGAGAGCTGGAGAAGGCATATCAGAATGTTCATGTCAATAGTGATGAAAATGAAGATGATAATGTGGATTCACAAAATGGTGATCATGAAAGCTCTGCCCAAAAAAACAAGTCAAATGTGGAATGCAAAGGGAAGACAAGAAACCATCTGTTTAACTTGACTCTTGTCAATTCATACGGGAGTGCTGATATCCAGGCACTTGAAGACAACAAGCTACTGAAAATAACAGGACGTTGTTTTCTTGCACTTGACTGGGATTCAAAGGTGAAGGAAAAGTACTATGATGACCAAGTTGCAGAGGAGTCTGAAGATCATGAAAGTGTCACCAAAAAACCGGCACAGAAGAAGAATTGTGTTGGGTTAAGTGACTGCATTGACCTCTTTTTATCAAAAGAAAAGCTTGGCGCAAATGACCCATGGTATTGCCCATCTTGCAAGAAGCATCAACAGGCTACCAAAAAGTTTGATCTTTGGTCTCTTCCCAAAATCCTTGTTGTCCACCTCAAACGATTCTCTTACAACAGGTTTGCAGCACGTTCTGTTTTTCTTAGTACCAACCTTAAGATCCACGACGGCAACGCCAACAAAAAAAACCTTGAAATAAATGTGATGCTCATTGGTTTCAGGCACCTTGATATGTCGGACTATGTGATTAACAAGAAACAGCCGCGTCCAGTGTACAATCTGATTGCAGTGTCAAACCATTATGGAGGCATGGGAGGAGGACATTATACAGCTTATGCAAAGAACTGTAAGGATGACAGGTGGTATTCGTTTGATGACAGCTCCGTTTCTTCTGTTTCTGATGATGGACAAATTGTTTCCAAGGCAGCCTACGTCCTTTTTTATGAGCGGCAGGAGATGGGGGACGAGGAGAGCATGGAAGAGAAACAAACAGAAAATAGCCCTGATCAAGACATAGACATGGTCCATGATGGAGTCTGA

Transcript

ANN23623-RA

Protein

Uniprot

Gene family

Uniprot term	Description
P35123	Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus OX=10090 GN=Usp4 PE=1 SV=3
Q13107	Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens OX=9606 GN=USP4 PE=1 SV=3
A6QR55	Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus OX=9913 GN=USP4 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14836	Ubiquitin_3	Ubiquitin-like domain	Domain	Interproscan
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF06337	DUSP	DUSP domain	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF20049	DUF6451	Domain of unknown function (DUF6451)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR028135	Domain	Ubiquitin-like domain, USP-type	Interproscan
IPR050185	Family	Ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR006615	Domain	Peptidase C19, ubiquitin-specific peptidase, DUSP domain	Interproscan
IPR035927	Homologous_superfamily	DUSP-like superfamily	Interproscan
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR045609	Domain	Domain of unknown function DUF6451	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21646	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan