Gene detail

Detailed information of ANN23648-RA in Montipora grisea

Genomic Location: Scaffold_30__1_contigs__length_1402442:1335023...1336084
NR annotation: MBX2853074.1, DNA-directed RNA polymerase subunit alpha [Phycisphaeraceae bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7UIC5	DNA-directed RNA polymerase subunit alpha OS=Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1) OX=243090 GN=rpoA PE=3 SV=1
Q3A6M0	DNA-directed RNA polymerase subunit alpha OS=Syntrophotalea carbinolica (strain DSM 2380 / NBRC 103641 / GraBd1) OX=338963 GN=rpoA PE=3 SV=1
Q39XX9	DNA-directed RNA polymerase subunit alpha OS=Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15) OX=269799 GN=rpoA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012164 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01000 all species →	RNA_pol_A_bac	RNA polymerase Rpb3/RpoA insert domain	Domain	Interproscan
PF01193 all species →	RNA_pol_L	RNA polymerase Rpb3/Rpb11 dimerisation domain	Domain	Interproscan
PF03118 all species →	RNA_pol_A_CTD	Bacterial RNA polymerase, alpha chain C terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036643 all species →	Homologous_superfamily	DNA-directed RNA polymerase, insert domain superfamily	Interproscan
IPR011262 all species →	Domain	DNA-directed RNA polymerase, insert domain	Interproscan
IPR011263 all species →	Domain	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	Interproscan
IPR011773 all species →	Family	DNA-directed RNA polymerase, alpha subunit	Interproscan
IPR011260 all species →	Domain	RNA polymerase, alpha subunit, C-terminal	Interproscan
IPR036603 all species →	Homologous_superfamily	RNA polymerase, RBP11-like subunit	Interproscan

PANTHER

No PANTHER signature was detected for ANN23648-RA. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03040	rpoA; DNA-directed RNA polymerase subunit alpha	EC:2.7.7.6	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.