Gene detail

Detailed information of ANN23666-RA in Montipora grisea

Genomic Location: Scaffold_33__1_contigs__length_1257472:265758...268942
NR annotation: PON18837.1, alanine--tRNA ligase [Candidatus Entotheonella serta]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN23666-RA

ATGACCAGTCATGACATTCGCAAGGCGTTCTGGGGCTTTTTCGAGGCGCGTGGCCACCGCATCGTCAAAAGCGCCCCGCTGGTCCCGAAAGACGACCCGACCTTGCTGTTCACCAACGCCGGCATGGTGCAGTTCAAAGACGTGCTGCTGGGCCGCGAAAAACGCGACTACAACCGGGCCGTCAGTTCGCAGAAATGCGTGCGCGCCGGCGGCAAGCACAACGATCTGGAAAACGTCGGCTATACGGCCCGCCATCAAACCTTCTTCGAAATGCTCGGCAATTTCTCCTTCGGCGATTATTTCAAGTCCGGCGCCATCGCCTTCGCCTGGGAATTCCTGACCCAAGAGCTGTCGCTGCCCAAGGACAAGCTATGGGTGACCGTCTTTCGCGACGATGACGAGGCGTTCGACATCTGGCAGCAGGAGGTCGGCGTGCCGGTCGAGCGCATCGTGCGCATGGGCGAGAAGGACAACTTCTGGGCCATGGGCGACACCGGACCCTGCGGACCGTGCTCGGAAATCCATATCGATCAGGGCCCGGCCCTTGGCACCGGCCCTGAGGACGTGCTCGGCGGCGAGGGCGACCGCTACCTCGAATTGTGGAACCTGGTGTTCATGCAGTACGACCGCGACGCACGCGGCAACCTGACACCACTGCCGCAACAGAACATCGACACCGGCCTGGGCCTGGAGCGCATCGCTGCCATCATGCAGGGCGTCCATAGCAATTACGACACCGACCTGTTGCGGCCGATCATCGGCGCGGTGGAGGAACAGATCGGAAAACCCTACGGCGACAGCCAGGCGGATGACGTTTCGATGCGGGTCATCGCCGATCACATGCGCGCCAGCGTGTTCTTGCTGGCCGACGGCGTGCGGCCCGAAAACACCGGACGCGGCTACGTGCTGCGGCGTATCCTGCGCCGCGCCGCGCGGCACGGCAAGATGCTCGGCCTCGACGAGCCGTTCCTGTACCGCCTGGTGGACGCCGTGTTGCAGGTGATGGGCGCGGCCTACCCGGAGACCGCGCAGCAGACCGACTACATCGCCAAGGTGTTGCTGGGCGAAGAGGAGCGTTTTCTGCACACTCTGCACCAGGGTCTGCGCGAACTGGACGCCCTGCTGGAGCAGCACCGCGCCGACGGCAGCCACCGCATCACCGGCTCGGAAGCCTTCCGTCTCTACGATACCTTTGGCTTTCCCATTGATCTGGCCACGGAAGTCGCCGTGGAAAGAGGCATGGACCTCGACCGCGAGGGGTTTGAGGCAACCCTGGAAAGCACGCGCCAGCAGGCGAGAGAGACCTGGAAAGGCTCCGGCGAGGTGCAGGTCGCACCGGTGTATCAGAACGTGCTGCAGCACGTCGGCGGCTGCAACTTCCTCGGCTACGAAACCGACCGGACGACCAGTCCGGTGGCGGCGGTCATCGTGGACCAGCAGGCAATGCGGGAGGCGTCACCCGGACAGGAGATCGAGTTGGTGTTCCCCCGCACCCCGTTCTACGGCGAGGCCGGCGGTCAGGTCGGCGACACCGGCAGCGCCGTGGCGCTGGAACTGGGCGTCGAGATCGACATCCGCGACACCCGCAAGCCCCTGGAGGACCTGATTGTACACCGCGGCGTGGTCAGGCGCGGCGTCGTCAAGCCCGACATGCCCCTGGAACTGGCCATCGACGCCGAGCGCCGCGAGGCCATCCGCAAAAATCATACCGCTACCCATTTGCTGCACGCCGCGCTCCGTCAGGTGCTCGGCGACCACGTCAAACAGGCCGGATCGCTCGTGGCGCCGGATCGTCTGCGGTTCGACTTCACGCACTTCTCGCGGCTGAGCGAGCGTGACATTGAGCGCATCGAGACCCTGGTGAACGAGCAGATCTGGGCCAACACGACCCTCACGACCTCGGTGCAGGACCTTGATTCAGCCATTGCCGGCGGTGCCTTGGCGTTGTTCGGCGAGAAGTACGGCGAGCACGTGCGCACCGTGCAGGTGCCAGGGTTCAGTCACGAGCTGTGCGGCGGCACGCACGTCGGCGCCACCGGCGAGATCGGCTTTTTCACCCTGACATACGAGGGTGGTGTCGGTTCCGGCGTGCGGCGCATCGAGGCGCTGACCGGTCCCGGCGCCTTTGCGCGGGTGAAACGCGAGGGACGGCTGCTCAGCGACCTGCGACAGGTGCTGAAGGCGCAACCAGCCGAGGAACTGGACAAATTGCAGCGGCTCGCTGCGCAGCAGCGCGAATTGGAGCGGCAGGTCGAAGCACTGCAACAACGCCTGGCGGCGGCGCAGACGCAGGACCATTTTGGTCACGTCCAGGAGGTAGCCGGCATGAAGACGCTGGCGCTGTGCCTGGACAATTTCGACCGCAAGGCGTTGCGGTCGTTCGTGGACACCGCCAAGCAACGGCTGGGTTCCGGCGTCGTGGTGGCCGGCAGCGTGGCGGATGACAAAGTGGCCCTGGTGGCCGGCGTCACACCGGACCTGACGGTGCGGCTGTCCGCGGGCGCATTGCTCGGCAAGGTGGCGGCGCTGACCGGCGGCAAGGGCGGCGGCCGGCCCGACATGGCCCAGGGCGGCGGCACCGATGTCCGCAAGTTGCCGGAAGCCATTGCCCAGGTGCCGGACATCATCACGGCCCTGGTCGGCGAGGAGAACGAGGCAAAAGCTGAGCCGCACTGGAGTCATATCGACGCGCAAGGCCGCGCCAACATGGTCGATGTGGGCGCCAAGCCGACGACCGAACGCCAGGCGGTGGCGCGCGGCTGTGTGTACATGCAGGCGGCAACCCTGCAAGCCATCGTCGCTCAGGAAATCGCCAAGGGCGACGTGCTCCAGGTGGCGCGTCTTGCCGGCATCATGGCCGCCAAGCAGACGTCGTCGCTCATCCCCATGTGCCATCCGCTGGAAATCACCCACGTCAAGGTCGATCTACAACCCGACACCGAGGCCGCCTGTGTGCGGCTCGAAGCAACCGTGCGCACCGTGGGGCGCACCGGAGTCGAGATGGAGGCTCTGACCGCGGTCAGCGTCACCGCCCTGACCGTCTACGACATGTGCAAGAGTCTGGACCGGCAGATGCGCCTGGGCGATATAGAATTGCTCTCGAAGAGCGGCGGCAAGAGCGGGCGGTACACCCATCCCGATTACCAAACAGCGGCCGAGATGGCCCCATAA

Transcript

ANN23666-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3A1W0	Alanine--tRNA ligase OS=Syntrophotalea carbinolica (strain DSM 2380 / NBRC 103641 / GraBd1) OX=338963 GN=alaS PE=3 SV=2
P61701	Alanine--tRNA ligase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=alaS PE=3 SV=1
A1ATU9	Alanine--tRNA ligase OS=Pelobacter propionicus (strain DSM 2379 / NBRC 103807 / OttBd1) OX=338966 GN=alaS PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002674 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07973 all species →	tRNA_SAD	Threonyl and Alanyl tRNA synthetase second additional domain	Domain	Interproscan
PF01967 all species →	MoaC	MoaC family	Family	Interproscan
PF02272 all species →	DHHA1	DHHA1 domain	Family	Interproscan
PF01411 all species →	tRNA-synt_2c	tRNA synthetases class II (A)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002318 all species →	Family	Alanine-tRNA ligase, class IIc	Interproscan
IPR009000 all species →	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR047594 all species →	Family	Molybdenum cofactor biosynthesis C, bacteria/eukaryotes	Interproscan
IPR012947 all species →	Domain	Threonyl/alanyl tRNA synthetase, SAD	Interproscan
IPR036522 all species →	Homologous_superfamily	Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR050058 all species →	Family	Alanine--tRNA ligase	Interproscan
IPR018162 all species →	Homologous_superfamily	Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily	Interproscan
IPR018163 all species →	Homologous_superfamily	Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily	Interproscan
IPR018165 all species →	Domain	Alanyl-tRNA synthetase, class IIc, core domain	Interproscan
IPR002820 all species →	Domain	Molybdopterin cofactor biosynthesis C (MoaC) domain	Interproscan
IPR023045 all species →	Family	Molybdenum cofactor biosynthesis C	Interproscan
IPR003156 all species →	Domain	DHHA1 domain	Interproscan
IPR018164 all species →	Domain	Alanyl-tRNA synthetase, class IIc, N-terminal	Interproscan
IPR023033 all species →	Family	Alanine-tRNA ligase, eukaryota/bacteria	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11777 all species →	ALANYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0043039 all species →	Biological Process	tRNA aminoacylation	Interproscan
GO:0006777 all species →	Biological Process	Mo-molybdopterin cofactor biosynthetic process	Interproscan
GO:0002161 all species →	Molecular Function	aminoacyl-tRNA editing activity	Interproscan
GO:0004813 all species →	Molecular Function	alanine-tRNA ligase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006419 all species →	Biological Process	alanyl-tRNA aminoacylation	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01872	AARS, alaS; alanyl-tRNA synthetase	EC:6.1.1.7	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.