Genomic Location: Scaffold_33__1_contigs__length_1257472:452854...453939
NR annotation: MBM3226050.1, phosphate acyltransferase PlsX [Candidatus Tectomicrobia bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN23686-RA |
| Transcript |
| ANN23686-RA |
| Protein |
| ANN23686-RA |
| UniProt accession | Description |
|---|---|
| A5D1F0 | Phosphate acyltransferase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) OX=370438 GN=plsX PE=3 SV=1 |
| Q3A4M6 | Phosphate acyltransferase OS=Syntrophotalea carbinolica (strain DSM 2380 / NBRC 103641 / GraBd1) OX=338963 GN=plsX PE=3 SV=1 |
| B3E2J9 | Phosphate acyltransferase OS=Trichlorobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) OX=398767 GN=plsX PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0011866 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02504 all species → | FA_synthesis | Fatty acid synthesis protein | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012281 all species → | Family | Phospholipid biosynthesis protein, PlsX-like | Interproscan |
| IPR003664 all species → | Family | Fatty acid synthesis PlsX protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30100 all species → | FATTY ACID/PHOSPHOLIPID SYNTHESIS PROTEIN PLSX | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006633 all species → | Biological Process | fatty acid biosynthetic process | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0016747 all species → | Molecular Function | acyltransferase activity, transferring groups other than amino-acyl groups | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03621 | plsX; phosphate acyltransferase | EC:2.3.1.274 | Lipid biosynthesis proteins | ko01004 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
