Gene detail

Detailed information of ANN23704-RA in Leptoseris scabra

Genomic Location: Scaffold_1__1_contigs__length_42512999:27771627...27785902
NR annotation: CAH3148198.1, unnamed protein product, partial [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN23704-RA

ATGCATCCACACAACAGGTATCTGTGCACCCATCCATTCATGCATGAATACAGTCGCGGCATTAAATCGATTATTCAAACCGATATCTGTTTCAGTTTGCATTCATATTATGCAACAGCTTTCTTTTCGCAATTTTTTGTAGAATTTTTACCTCCCTTGCTTCCGGGATGTCTGAGACCACTGGGGATGCAAGATGGCGGAATTCGTGACTCAGCAATTACTGCATCATCTTACTACCGAACACGATCGGCACCTTCAAGAGGGAGGCTTCACCTGGCTGTACCAGACTCTTATGTTGGTGTCACGGGAGGGTGGTGTCAGCGTCCCAGCCAGTATTACCAGTGGCTCCAAGTAAATTTTGGTTACGTGGCCAGTGTCGGCAAGGTTGCCACCCAAGGAAAACAGGAACTCGATTTTTGGGTGACCAAGTACTTTCTTACTTACAAACGTGACGTAAATAGTACGTTTGTGCTCTATCGACAAAACGGAAATGCAAAGATATTTGATGGTAATTTTGACCGTCATACTGTTGTCAGCCATCTTCTCATTCCACGCATCACAGCCCAGTTTATAAGGATTTATCCCTACAGGTATCGTCAGTTTGGTTGCCTTAGAGTCGAGTACTACGGCTGCGCAGTAGATAATGCTGATGAACCACAAACTCCTTGCTATGCCCCCCTTGGGATGCAGAGCGGTCAGATACCCAACGCTTCAGTTACAGCCTCCTCTAATTTTGGTTCCGCTCACCGCGCTCGGCTCCACACGGTGGAAGAAGGTGGTAAACTTGGTGCGTGGGTGGCAATTTTGGCAGACTTGAATCAGTGGCTTCAGGTCGATTTGGGGGCTCTTGTTATGATAAGAGGCCTGGCCACCCAAGGACGACATGGAGTTCCGGAGTGGGTCACCAGTTTTACTCTTTCTTACAGTTCAGTGATAACCAACTTTCGATTTTATGAAGTCAATTCCACGGTAAAGATCTTTACTGGTAACAGCAATCAGATCACGGTAGCAGTGAATGTGGTAAATCCGCACATACTGTCCAGGTATCTTCGCATTCACCCGCGCACCTGGGTCAGTAATATTGCCTTAAGAATTGAAGTCTTTGGCTGCTTTGCAGTAAACATGAACATTCAGGATATCAAGGACATGGGATGCCACAAGGATACTCCTAAGAGAGCTATTCCGTTGCTGGAAGGGATGAGTCATCTTCTAGATGGCAGCTACATGCAGAGGGCAGCTGCCATTAGACGTTGTGCAAAGGCTGCGTACGATCTTCAACTTGATATTTTTGCGCTACAGAATGGTGGACAGTGTTTCGGAGAACCGCGAGCTCAAGCGCGATTTAATAAGTACGGCGTTTCAACACAATGCTCAGCAAATGGCCGAGGAGGACCTTGGGCTAATCAAGTATACAGGATAAACAGAAGATGCAATTTGCTTAATGAATGGTGTGATTGGAGGAGACATGGTGATGTTACACCAAGGTGGAGTGTGCACAAGTCAGAGGACTTGAACAGAGCTAGCGCCGAAGCTTATGCGGATTACGGGAATCAGCACGACAGACGCTATACATTGGAGACGTGGGGTAACAAACGCCTTCACGTGACTGCTTCAGTCTCGAGTCGTAAACACATCACCGAACTGACAGTATGTTACTGGCTACAAGATAACAATGCTACGTTATCAGTGATCTACACAACAACTGAGAACAAATATGCCTTTAGTGTGCAGCAGAATTTCACGGGTCTAAGCTTTGCTGTCATGAAAAATAGCATTTTGTCAAAAGTCACTGTGGACAAACACACCTGGCATCATCTTTGTGTTTCTTGGAGTTCTCAAGGAGGATTCTGGAAAATTTACAAGGATGGAAGACTCTTTGGCTTTGATAGATGGCCCGGATACGAACAGGCAATATTAGATCGTGCCGCGGACAGCACAGTTTTTGTGCCTCGAGCAGAAGTCAATGAGGCGTGCACCGTTGTCGTTCATCATTCCACAGCCGTGTTACCCTGTAGCTTTGTCACGCTTGGCATTGTCAGCTCCATCCTTGGCGTTCGTATCCCCGATGTTCAGAAGCATGTCATATTAGGCTCCTTTGGAGATTGCGTGCTGTCATCTTTGTTCTCCTCCCCGACTTCATTCGGTGGTATGATGACTTTTACTGGTAAACTGGATATAGATCTAAAATATGTCGGGCACATGTCATCATTACAATGCGTATTTTCAGGAAATGGAGCTGTTAGTTTATCATTCCAACAAAACAACGAGTCAAGAAGGTCAAGGCTGAGTGGGGTAAACGTGTGGGACCATGTGCTAACAGTAGACCAAGTGTACCGACTTTCTCTTGGATGTGGAGACGAAACCGGAAACCTTCTGCAGTGGGTTGATATGAAGAGTTACGCCCCGGCTGAACATGTGTCGAAGTTAAGAGGCCTTTCCTGCACAAATCGTGATGGTGTTATGAGTATGGTTAGTAATAATTCTGAAGGAGAAGCTGTGTTAGAGAGTCCTTTGTACAACAGGTCAGCAGAAGGATACGGAAAATGTCTTCAGTTTAGGTTCTTAATGTTTGGAGCAGGAGCTAAAACGATGGAGATTTATCAAGATATAAACGCATATCAGAGAAGAGTGTGGAAAGATTCCAACAACACTGTTCCACACTGGCGCTATGGACAAGTGTCTTTTAACTCTGTTACAAGCAGTAAGGTCATCATCAAAGGAGTCCTGAAAAATCTGCCTAGTTACATAGCCGTTGGAGGGTTGTCTTGGACTGATGGTTACTGTGATGCTAAACCATCCTTAGCTGACAGACAAGCATGCAGTGAAAACCTTGTGACGTCATCTGCTTTCCTCTCATCACCTTATCATCCGGGGTACTACCCACCTAATTCCTATTGCAAGTGGTTTATCACTGCACCAGTTGGCCACGTGGTGCGCCTTAAGCTTCTTGACTTTCAACTAGAATATGATACCCGCTGTGCAAATGATTTCCTGGAAATAACCGATGGCCAGAAACCAAGCGCAGAGAGCTTGGGGAGATTTTGTGGAGAGAGCATTCCTGGAATTATTGAATCATCTGGTAATACAATGCTCATTACCTTCAAATCTGACAAAGACATTCAAAGAACTGGCTTCAAGCTGCACTACTCCTTTAGAGAACAAACTGAAGACAAGATATGTGCCGATAAAAGAGACTGTCCCTCAGGCTGCTCGTGCTTTAAGATCAGCGACAATCCCAAGAAGTTTGCAATCCAAGGTTATGAACTACGAACTGTACCAAAGAACATGCCCTCCTACACAACGGCTTTGTAA

Transcript

ANN23704-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P00451	Coagulation factor VIII OS=Homo sapiens OX=9606 GN=F8 PE=1 SV=1
Q593B6	Coagulation factor V OS=Pseudonaja textilis OX=8673 GN=F5 PE=1 SV=1
Q58L91	Venom prothrombin activator oscutarin-C non-catalytic subunit OS=Oxyuranus scutellatus OX=8668 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000139 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF00354 all species →	Pentaxin	Pentaxin family	Domain	Interproscan
PF00629 all species →	MAM	MAM domain, meprin/A5/mu	Domain	Interproscan
PF00431 all species →	CUB	CUB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050633 all species →	Family	Neuropilin/Multicopper Oxidase/Coagulation Factor	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR001759 all species →	Family	Pentraxin-related	Interproscan
IPR000859 all species →	Domain	CUB domain	Interproscan
IPR000998 all species →	Domain	MAM domain	Interproscan
IPR030476 all species →	Conserved_site	Pentaxin, conserved site	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46806 all species →	F5/8 TYPE C DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0017154 all species →	Molecular Function	semaphorin receptor activity	Interproscan
GO:0030424 all species →	Cellular Component	axon	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0098978 all species →	Cellular Component	glutamatergic synapse	Interproscan
GO:0099055 all species →	Cellular Component	obsolete integral component of postsynaptic membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN23704-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.