Gene detail

Detailed information of ANN23863-RA in Leptoseris scabra

Genomic Location: Scaffold_1__1_contigs__length_42512999:30345488...30363618
NR annotation: XP_033642691.1, uncharacterized protein K02A2.6-like [Asterias rubens]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN23863-RA

ATGCAAAGGCTATTTTTTAGAGGCAAACAGCTTGAAGATGGCCACACATTGTTTGACTACAATGTTGGGCTGAATGAGATTGTCCAGTTGGTGATCCGGACAGTTCCACCACCTGGTGACATCAACAATAACGGAAAGCAAGCACAGAAAGAAGTTGAAAAATCTGATGAAAAATCTTCGGATTCTCCTTTGCAAGTCAATGGCCATGTTTCAAGAGACAGCGAGGTAATGGAAAATGGTGAGAGCGAGCCAAGCACATCAGAAGACAAGACTATTAAGAGCCTTTATAAAAAAGGTGAAATGATAGACGCTAAAGATCCCACCATGGGAGCGTGGTTTGAAGCCAAGATAGTGGACATATCTTTTGCAGATGAAAATGACCCAAGTTCCATTCTGTATCATGTGGTCTTTGATGGGTATGAAGAAGATGAAATTAACAAACTTTCTGAAAGTTCAATTAGACCCATAGCAAGAACAGCTCTAACATGGGATCAGATTTCGGTTGGCCAAGTAGTAATGGCAAATTATAATCCTGATGAGCCGGATGAGAGGGGCTACTGGTATGATGTCAAAATCACTAAAAAGTATGATGGTCCAACAAGAAATACCAGAGAACTTTATGCAAGGTTAATGTTAGGAACTAATACAGATGACACAGTTGCTCAGGAATTTAGACTCAAGTTTGTAGACAAAGAGATCTTCAAGATTGAAAGCCCTCCAGATCCAAGCAGTTCAGGAGAATCATCAAGTCCACTAAATGGAAGAAATTCACCAGCTAAAAGACAAGTGAAACCTGATTGTAGCTACTGTAAAGATAACCCAAACAAACTGTGCAAACATTGTGCATGTCATAAGTTCGATTGTCACTCGGATCCGGCCACGTTGGGACCACGATGGAAGCGATGGTTAACTTCTTTTGAACTGTTCGCGGATGGTAAAGGTCTTATTATCACCGAGGGCACAAATGCAGCCACGAAACAACGGAGAAGAGCCATGTTACTCCATTTCGCAGGCCCCGATGTACAAGAAATCTTCTCTACTCTCGCGGACACCGGCGAAGCAACCGATTACGCAGCAGCTGTAACAGCGTTGAATGGGTATTTTCTTCCTAAAGTCAACTCTGCTTTCGCTCGCCAGAAATTTCACCGACTCCAACAAAAGGAAGGTGAGACTGTTTTGCAGTTTGTAACTCGATTAAGAAAAGAAGGAAAGGACTGCAATTTTGGTGCAGACTTTGACAACCAGTTAAGAGACGCTGTCCTGTGCAAATGTAGGTCAGACTATGTGAGACGTAAATTGCTTGAGGAAAGGGAAGAGCTAACCCTTGCCCGTACGTTAGAACTCGCAGAACAGTGCGAAAGTGTAGAGCACCAAATGTCTCAGCTCAGTATGAATGAACCGAGTAAATTGGATGCAAACAGGGTTTATGAGAAAGCTGGGAGACCCAAGAGTAAACAAAGGAGTAAAGGGAACAAGGGCAGAGAAATTCATTGCTATCGTTGTGGGTCAACTGGTCATCTGGGCGGAGATTCAAAATGCCCTGCTAGAGGCCAAACTTGTAGAAAATGTAAAGGGAAAGACCATTTTGCTAGTGTCTGCAAAACCAAAACAAAGAAACCAGGAGTTAACCAAATTCAAGAAGAACCACAAGCCAGTGGGGAGCAAGTTGATTATGCTTTCAGAGTTACGGATAGAGTCCAGTCAAACATGCTTAAGTTGTCTGTGGGTGGGGTAGAATTAGAGATGCTGGTGGATTCTGGAGCCACCAATAACATTGTTGATGAAGAAACTTGGGAGCAATTGAAAGCTAAAAGGATTAAGTGCAAGTCTGAAGCTGCCCCTGTTGACAGGAAACTATATGCTTATGCATCTAACAAGCCCCTCCCAGTAAAAGGTCGTTTTATCTGTGAAGTGGTGGTTGGCCAAGGGAAAGCTCAAGCTGAATTCCTAGTTATTAAAGGAAAGGGAGTACCACTCCTTGGCAAGGATACTGCAATGAAGCTGGGTGTGTTGAAAATAGGTGTCGACATCGCTACGGTTGTTGAAACCAAGCAGATACTGCAGCAAAAATTCCCAGAAGTGTTTGGTGGAATTGGAAAGCTGAAATCTAAACAAGTCACACTACACATAGATCCAGCAGTGAAACCAGTAGCCCAGCCGCTGAGGCGAATTCCCTTAAATTTGCAAGATAAGGTGGAGAGAAAGGTTCAAGAATTGTTAGACTGTGACATCATAGAAGAGGTCGATGGGCCAACGCCATGGGTGAATCCAGTAGTAATCATTCCGAAGGCGGACGGTGATATTCGTCTCTGCATTGATATGAGGAGAGCGAATGAAGCAATAATACGAGGTAGATACCCCATACCAACCGTAGATGAGTTGCTGCACAACATGAATGGCTCCAAAGTTTTCAGCAAGCTAGATTTAAAGTGGGGATATCATCAGCTGGAACTTAGTCCCGAGTCACGCCAGATAACCACCTTTGTGACACACAAAGGCTTGTACAGGTATAAGCGCCTTTTGTTTGGTGTGAGTTCAGCAAGTGAGCAGTACCAGCATGAGATATCTACCGCCTTGGCTGGAATAGAGGGAGTCGACAATATCTCTGACGACATCATTGTACATGGCCCAGACCAGACAACTCATGACCAGCGCCTTCACAAAACTATGCAACGTCTCAGACAGCATGGTTTGACCCTCAATGTTGACAAATGCCTGTTCATTGTGGACAGATTGGTTTTTATGGGCATTCTCCTCTCTGAAAAAGGAATTGGCCCAACAGAGGAAAGAGTTAGAGCTCTGCAGGAGACAAGAGAGCCAACAATTGTCAGCGAAGTACGAAGCTTCCTGGGATTGGCTAATTACAGCAGTAGATTTATTCCTCATTTTGCCACACTCTCAGAACCACTGAGGCAACTAACCAGGAAAGATGTCCCATTCCATTTTGGAGCTGAGCAAAAAGCTGCTTTTGAGTCATTGAAGCAAAGCATGGCTGAAGCAGGAACACTCGCATACTTCGACAAGAATGCACCAAGCAAAGTCATCGCAGACGCGAGTCCTGTTGGCCTTGGAGCCGTGTTGGTGCAAAGCCAGGATGGAGCATGGGTGCCAATTTGCTATGCAAGCCGCAGCCTCACAGAGTGTGAACGCAAATACTCCCAAACTGAAAAGGAGGCCCTTGCTCTTGTTTGGGCATGCGAGAGATTCCATGCATACATCTATGGAATGAGGTTTGATCTGGTAACCGACCACAAACCGTTGGAAGTCATCTATGGTCCCCGTTCCAAACCCTCAGCCCGAATTGAGCGATGGGTAATCCGTCTACAACCGTACAACTTCCGCATTGTGTATGCTCCAGGGCAAAGCAACATAGCTGACCCTCTCTCCCGTTTGCTAAGTCGGAACAAAGCAACGAGTTATGAACATGGAGCAGAAGAATATGTCCGATTTGCAGCCATCAGTGCTACACCCGCAGCCCTAACTACAAGAGAAGTTGAAGAAGCATCTGCAGTGGACGAAGAGTTGATAGCTCTGAGAGAAGCAGTTAAAACTGGTCGATTTGAGAAATGCAAGGCTTATTCACCAGCTGCAGGTGAACTGTGTGTGATTGGGCAACTAGTCCTAAGAGGTACCCGTATTGTACTGCCAAGCAAGCTAAGGCCTCAAGCAATTGCCTTAGCCCATGAGGGACATTTGGGAATCGTAGGAACAAAGCAAAACTTGAGAAGCAAAGTATGGTGGCCTTGTATGGATAAGGCAGCAGAGAAATTTTGCAAGTCTTGTTATGGATGTCAGCTGGTGGCACGTCCAGACCCACCGGAGCCATTGAGGTCTACGACATTACCAGAGGGACCTTGGCAAGATCTGGCTGTAGATCTTTTAGGACCACTCCCATCTGGACACTCGATACTAGTTGTTGTTGACTACTTTCGCCGTTACTATGAGTATGCGATCATGACATCCACTACCACTGTGAAAGTAATCGACAACCTAGAAGAGATTTTCAGTCGCCACGGTCTTCCCACAACTATCAAGTCTGACAATGGACCACAGTTCCGCTCAGAAGAGTTTCAGGAGTACTGTAAGCAGAATGGAATTGTGCATCTCAAGACTACACCCAAATGGCCCCAGGCTAATGGAGAAGTTGAAAGGCAAAATTCCTCCTTAATGAAGAGAATTCGCATTGCTCAAGCTGAAAGGTTGGACTGGAAGAAGGAGTTAAGAAGATATGTGACCAAGTACCGAGGTATTGACCACGCGACTACCGGCAAAAGCCCTGCCGAACTGTTGTTCAATCGGAAGATAAAGGGGAAGCTGCCAGAACTACATGCTGATTATCGTCCAGATTTGGAAATCCGTGACAGGGATGTAGAGGTCAAAGCAAAGACCAAAGCGTATGCCGATAAGTTTATGAATGCGAGACCGTCTGAAGTTCAAGTTGGTGACCAAGTACTTGTGAGGCAAGAGAAGAAGGATAAGTTCTCCACACCATTTAATCCATCACCATTCCAAGTTGTAAGCAAGACAGGCAACAGTGTCGTGGTAGAATCCCAGGGTGGGACCCAGTACTCAAGAAATACTTCCCATGTAAAGAAGTTTGTGTCAGAGACCCCTATGTCTGCAATCAAAGCACCATCTGCTGTTCCAGGCGAATCTGCAGTAGGAGATACATCCACAGTACCTACCACAATACCAAGTCAAGCTACATATGAATTGACACCAGTGGCACCCGCCACACCATCAAGTTTACCTTTGACCAGGATTACACCATTAACACGAGCAAGTGTGAAGAATGAAAATGAGGCAGTTCCACTCCATAAGGATGTTGTAGTTGATCAAGCAACAGTGCCTATAAGTACCCCAGCAAGACCGAGGATACGACAAAACACGACTCTTATTGGTCAAGATGGGGAAGCTTTGACCATCAAAGCTTTAAAGTGTGGTGGAAAGGAAAACCCAGGTGACCAACTGCTTTGTGATGAATGTGATATGGCTTATCACATCTACTGTTTGGTTCCTCCACTGAAAAAAATCCCCGATGATGACGAATGGTATTGCCCACTGTGTAAGAATGACACATCAGAGGTCATCCATGCTGGTGAGAAGTTGAGAGAAAGCAAAAAGAAACAAAAGATGGCATCTTCAAATTCAACTGCAAACAGAGACTGGGGCAAGGGTATGGCATGTGTTGGTCGCACTAAAGTTTGTTCAATAGTACCCCCAAACCATTTTGGACCTATTCCTGGTGTGCCTGTGGGTTCTGCTTGGAAGTTCAGAGTTCAGGTGAGTGAAGCAGGAATACACCGACCTCATGTTAGCGGGATTCATGGCAGAGATTCTGACGGTGCTTACTCAATTGTGCTTGCTGGTGGATACGAAGACGACTTGGACAATGGGGATGAGTTCTTTTACACTGGCAGCGGTGGAAGAGATCTCTCTGGAAATAAGAGAACAGCTGAACAGTCATGTGATCAAACACTTACAAAAATGAATAGGGCACTTGCAAAAAACTGTGCTGCACCACTGAATGACAAGGAAGGAGGCAAAGCTAAAAATTGGAGGGAAGGGAAAGCTGTCAGGGTGGTATGTATCAAGCATTGGATACTTGTTTTGTTGACCAGCTGA

Transcript

ANN23863-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F6UA42	E3 ubiquitin-protein ligase UHRF1 OS=Xenopus tropicalis OX=8364 GN=uhrf1 PE=3 SV=2
B6CHA3	E3 ubiquitin-protein ligase UHRF1 OS=Xenopus laevis OX=8355 GN=uhrf1 PE=2 SV=1
E7EZF3	E3 ubiquitin-protein ligase UHRF1 OS=Danio rerio OX=7955 GN=uhrf1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000003 (this species only)
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan
PF12148 all species →	TTD	Tandem tudor domain within UHRF1	Domain	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF02182 all species →	SAD_SRA	SAD/SRA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR003105 all species →	Domain	SRA-YDG	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR001969 all species →	Active_site	Aspartic peptidase, active site	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR021991 all species →	Domain	UHRF1, tandem tudor domain	Interproscan
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR036987 all species →	Homologous_superfamily	SRA-YDG superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN23863-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.