Genomic Location: Scaffold_37__1_contigs__length_985927:532097...532447
NR annotation: MBY8975783.1, iron-sulfur cluster assembly accessory protein [Coraliihabitans acroporae]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN23906-RA |
| Transcript |
| ANN23906-RA |
| Protein |
| ANN23906-RA |
| UniProt accession | Description |
|---|---|
| B4EZU6 | Iron-binding protein IscA OS=Proteus mirabilis (strain HI4320) OX=529507 GN=iscA PE=3 SV=1 |
| P44672 | Iron-binding protein IscA OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=iscA PE=3 SV=1 |
| A7FFX3 | Iron-binding protein IscA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) OX=349747 GN=iscA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006776 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01521 all species → | Fe-S_biosyn | Iron-sulphur cluster biosynthesis | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR035903 all species → | Homologous_superfamily | HesB-like domain superfamily | Interproscan |
| IPR050322 all species → | Family | Iron-sulfur cluster assembly and transfer HesB/IscA | Interproscan |
| IPR016092 all species → | Family | FeS cluster insertion protein | Interproscan |
| IPR000361 all species → | Domain | FeS cluster biogenesis | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10072 all species → | IRON-SULFUR CLUSTER ASSEMBLY PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0016226 all species → | Biological Process | iron-sulfur cluster assembly | Interproscan |
| GO:0051537 all species → | Molecular Function | 2 iron, 2 sulfur cluster binding | Interproscan |
| GO:0097428 all species → | Biological Process | protein maturation by iron-sulfur cluster transfer | Interproscan |
| GO:0051536 all species → | Molecular Function | iron-sulfur cluster binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13628 | iscA; iron-sulfur cluster assembly protein | - | Transfer RNA biogenesis | ko03016 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
