Gene detail

Detailed information of ANN23912-RA in Montipora grisea

Genomic Location: Scaffold_37__1_contigs__length_985927:582604...585956
NR annotation: MAJ05053.1, translation initiation factor IF-2 [Marinovum sp.]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN23912-RA

ATGACCCGTGGCGGACGCACCAAGGACCGGGCCGGGCCGGAGCGCCGGTGCATTGCGACGGGCGTCAGCGGACCGACCGATCTGTTGATCCGGTTCGTACTGTCTCCGGATGGGGACGCTGTTCCCGATATCGCGGGCAAGCTGCCGGGGCGCGGCGCCTGGTTGACCGCCGACCGGGCGTTGGTCGAGCGGGCGATCAAAAAGAACCTGTTCAGCCGCGCCTTCCGCCAGCCAGTGACGGTGCCGCTCGATCTTGCAGACCGGCTGGAAGCGTCGCTGGTCAAGCGAATCACCGACCATATCAGCTTGGCCCGCAAAGCCGGTCAGGCCGTGACCGGGGCCGAGAAAGTGCGCGCACGGATCGCTGGCGGCGAGGCTGCGGTGCTGATTCAGGCCTTCGACGGGGCCGCAGATGGTCGAAAAAAGCTGTCTGCCCTGGCAAAGGCGGCTGGCAAAGGGCGGATTGCGGCGATCGAGCCGCTTTCGGCATCGGAATTGGGTTTGGCTTTTGGGCGCGAGTTTGCCATACATGCGGCGCTCGACGCAGGACAGTACATGAGCGACCAAGACGGCGACAACAAAGTAGGCGCACGCGGCCGAGGCGGACCGGGCGGCGCGGGCCGTGGGTCTGTGCGCCAGAGCTTCAGCCATGGCCGCACCAAGGCGGTCGTTGTCGAAAAGAAACGCAAGCGGATCATTCCGCCCGGCAGCACCGGAGGCAACGCGGCGGCCGCTGCGGCCGCTGCGGCTGTCGCGAAAAAAGCCGAGGCCTCGCCCGAGCCGAAACCAAAGGCCGAGGAGTCCAAGAAACCGGCACCCGCGGCCAAGGCCAAGGCGCCCGCCGCGCCGCGCGCCAAGACCCCTGGACGGGGCGGGGCGTCTCCGGGCGGTTTGACCAAGGACGAGGCCGCGCGCCGCTTGGCGGCCATTCGTCAGCATCAGATCGACGAAGAGGCCCGTAAGCTTCGCGAAGCGGAGGAAGAAAAGCGCCGCGAAGAAGAGACGCGCCGGCGTGCCGCCGAAGCCGCAGCCAAGGCACGGGCGGAAGAGGAAGAACGCAAGCGCCGCGCAGAAGAAGAAGAGCGGCGCAAGGCCGAGGAAGCTGCCGAAAAGGCCGCGGAAAAGGCCCCTGCCGCGCCCCAAGCGGCGGCGCCCAAACCCACGCCGCAACCCGCGCAGCGCACCGAGGACGACCAGCGCGCGAACAGGGGCCGCAGCGCGCCTGCTGCGCCGCCGAAAAAGCAGCAGACCCCATCGCGCGGGCGCGACGATGGGCGCAGGCGTTCGGGCAAGCTGACCATCAACCAGGCACTCAACGATTCCGATGGCGGGCGCCAGCGGTCTCTGGCCGCGATGCGCCGCCGCCAGGAACGCGAAAAGCGCAAGATGATGGGCGGGCCGGTCGAACGCGAGAAAGTCGTGCGCGATGTGGTGATCCCCGAGGCGATCACCGTTCAAGAACTCGCCAACCGCATGGCCGAGCGCGTCGCCGATGTGATCAAAGCGCTGATGAAGAACGGCGTCATGGCCACGCAGAACCAGTCCATCGATCAGGACACCGCCGAATTGCTGGTCGAGGAGTTCGGCCACAAGGTCACCCGCGTGTCCGAAGCGGATGTGGAAGACGCGATCGAATCGGAAGACGATGCCGAGGACCAGTTGCAGCCGCGCGCCGCGGTCGTGACCATCATGGGCCATGTCGATCACGGCAAGACCTCGATCCTGGACGCGTTGCGCAAGACCAATGTCGTCTCGGGCGAGGCTGGCGGGATCACCCAGCATATCGGCGCCTATCAGATCAATACCGATAGCGGGCACAAGATCACCTTCCTGGACACGCCGGGCCACGCCGCGTTCACGTCGATGCGCTCGCGCGGGGCGAATGTCACCGATATCGTGATCCTGGTCGTCGCGGCGGATGACAGCGTGATGCCGCAGACGATCGAGGCGATCAATCACGCCAAAGCCGCCGAAGTGCCGATGATCGTGGCGATCAACAAGATCGACCGCGAAGGCGCGGACCCCAACAAGGTACGCACCGAACTGCTGCAACATGAAGTGATCGTCGAGGCGATGTCCGGCGAAGTGCTTGATGTCGAAGTGTCGGCGATCACCGGTCAGGGCCTGGACACTCTGGTCGAGAACATCATCCTTCAGGCCGAACTTCAGGAGCTCAAGGCCAACCCGGACCGCCCGGCGGAGGGTGCTGTGATCGAGGCCAAGCTCGACACCGGACGCGGTCCGGTCGCCACGGTTCTGGTCCAGCGCGGCACCTTGCGCACCGGCGACATCTTTGTGGTCGGCGAGCAATGGGGCCGGGTGCGTGCCCTGGTTAACGATCAGGGCGACCGCATCAAGCAAGCCGGACCATCGGTCCCTGTCGAGGTGCTGGGCCTGAACGGCACGCCCGAGGCCGGGGATACGCTGAACGTGGTCGAAGACGAGGCCAAGGCCCGCGAGATCGCCGATTACCGGCAGCGCTCGGCCCGCGAAAAACAGGTCACCCAGGGCGCGCGCGCCACTCTGGACCAGTTGCTGGCCCAGGCGCAGTCGGGAACGGATGTCAAGGAACTGCCCATCGTGGTGAAATCCGATGTGCAGGGCTCGGCGGAAGCCATCGTCCAGGCGCTCGAGAAAGTCGGCAACGAAGAGGTCAAGGTGCGCGTGCTGCACTCGGGCGTCGGCGCGGTGACGGAATCGGATGTGACCTTGGCCGAGGCTTCTGGGGCACCGATCATCGGCTTCAACGTCCGCGCCAACGCGCCTGCCCGCAATGCGGCCAATCAGAAGGGCGTCGAGCTGCGTTATTACTCGATCATCTACGATCTGGTCGACGATGTGAAACAGGCCGCATCGGGTCTGTTGTCCGCCGAGGTGCGCGAGAAGTTCATCGGCTACGCCAAGATCAAGGAGGTCTTCAAGATCACCGGGGTCGGCAAGATCGCCGGCTGCGAGGTCACCGAAGGCGTGGCCCGGCGCTCGGCCGGTGTCCGCCTGCTGCGCGATGATGTGGTGATCCACGAAGGCACGCTCAAGACGCTGAAGCGCTTCAAGGACGAGGTCCGCGAGGTCCAGGTCAGCCAGGAATGCGGCATGGCCTTCGAGAACTACGAGGACATCCGCGAAGGCGACGTAATCGAGATTTTCGAACGCGAAGAGGTCGAACGCTCGCTCGATTGA

Transcript

ANN23912-RA

Protein

Uniprot

Uniprot term	Description
A8LQ56	Translation initiation factor IF-2 OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) OX=398580 GN=infB PE=3 SV=1
Q28WF7	Translation initiation factor IF-2 OS=Jannaschia sp. (strain CCS1) OX=290400 GN=infB PE=3 SV=1
Q16D38	Translation initiation factor IF-2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=infB PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11987	IF-2	Translation-initiation factor 2	Domain	Interproscan
PF08364	IF2_assoc	Bacterial translation initiation factor IF-2 associated region	Family	Interproscan
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF04760	IF2_N	Translation initiation factor IF-2, N-terminal region	Domain	Interproscan
PF04296	YlxR	Protein of unknown function (DUF448)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015760	Family	Translation initiation factor IF- 2	Interproscan
IPR023115	Domain	Translation initiation factor IF- 2, domain 3	Interproscan
IPR037465	Family	YlxR	Interproscan
IPR000178	Family	Translation initiation factor IF-2, bacterial-like	Interproscan
IPR044145	Domain	Translation initiation factor IF-2, domain II	Interproscan
IPR036925	Homologous_superfamily	Translation initiation factor IF-2, domain 3 superfamily	Interproscan
IPR013575	Domain	Initiation factor 2 associated domain, bacterial	Interproscan
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR035931	Homologous_superfamily	YlxR-like superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR006847	Domain	Translation initiation factor IF-2, N-terminal	Interproscan
IPR007393	Domain	YlxR domain	Interproscan
IPR029064	Homologous_superfamily	Ribosomal protein eL30-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43381	TRANSLATION INITIATION FACTOR IF-2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006413	Biological Process	translational initiation	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02519	infB, MTIF2; translation initiation factor IF-2	-	Mitochondrial biogenesis	ko03029	deepkoala