Genomic Location: Scaffold_37__1_contigs__length_985927:873770...874207
NR annotation: MBY8976149.1, MucR family transcriptional regulator [Coraliihabitans acroporae]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN23932-RA |
| Transcript |
| ANN23932-RA |
| Protein |
| ANN23932-RA |
| UniProt accession | Description |
|---|---|
| Q52741 | Transcriptional regulatory protein RosR OS=Rhizobium etli (strain ATCC 51251 / DSM 11541 / JCM 21823 / NBRC 15573 / CFN 42) OX=347834 GN=rosR PE=3 SV=1 |
| Q04152 | Transcriptional regulatory protein ros OS=Rhizobium radiobacter OX=358 GN=ros PE=1 SV=1 |
| P55613 | Putative MucR family transcriptional regulatory protein y4pD OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) OX=394 GN=NGR_a02080 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0037374 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05443 all species → | ROS_MUCR | ROS/MUCR transcriptional regulator protein | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR041920 all species → | Homologous_superfamily | ROS/MUCR transcriptional regulator superfamily | Interproscan |
| IPR008807 all species → | Family | ROS/MUCR transcriptional regulator | Interproscan |
ANN23932-RA in Montipora grisea.| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K25884 | mucR, rosR; MucR family transcriptional regulator, transcriptional regulator of exopolysaccharide biosynthesis | - | Transcription factors | ko03000 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
