Gene detail

Detailed information of ANN24030-RA in Leptoseris scabra

Genomic Location: Scaffold_1__1_contigs__length_42512999:33491445...33502879
NR annotation: CAH3131358.1, unnamed protein product [Porites lobata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN24030-RA

ATGGGCGACTCGATAGAGGACTTTCAAGTCCTGGAGCTAGTAGGCAAGGGAGGTTTCGCATGTGTCTACCGTGCTTGTTGCTTAGCAACAGGACAAGAGGTTGCCATCAAGATGATTGACAAGAAGGCCATGAAAACATCAGGAATGGTGGCAAGAGTGCGAAATGAAGTTGAAATTCACTGCCAACTTAAACATCCAGCTATCCTTGAGCTCTATAACTATTTTGAAGATTCAAATTATGTCTACCTTATCCTGGAGATGTGTCATAATTCAGAGATCAACTGCTACCTGAAGAAGACAGGGAGACCAGTGGGTGAAAATGAGGCTCGTCACATCATGACTCAAGTTGTCAAAGGTGTTTTGTACCTTCATTCGCATGGCATCATTCACCGGGATCTTACATTGGGAAACATTCTTTTGACCAGAGGAATGGATGCTAAAATTGGTGATTTTGGCCTTGCAACCAGGTTGTCAATGCCTAACGAGAAGCACTACACCATGTGTGGAACACCAAACTACATTTCTCCGGAGATAGCCACAAGAGGTCCTCATGGTCTTGAGTCAGATGTCTGGTCGCTGGGATGCATGCTTTATACCCTGCTTGTTGGAAAACCACCTTTTGATACTGAAGCTGTAAAAAGCACCCTGAACAGGGTAGTTTTGGCTGATTATGATTTGCCCAGTAATCTGTCATCAGAGGCGCAGGATCTCATTACCCAACTGTTGAAGAAGAATCCAGGAGACAGAATCACATTGTCAGGGATTTTAGATCATCCATTTATGACTCAAGAGAGGCTGTTGAAGTACTCATCAACCAATCATCTGTATCCTGCACAGAATGTTGCTGAGCAGTCACTGGACAGTGGGACAGGTACCATGGCAACAGTATCTACAGGCTTTGGTCGATCCTCAAAGTCAACTCATAGCACTAGTGAGCATACAAAGTCCATGGGCTTACAGGGCTCAGATGATGAAGTCTTTGTTAACAGATCAAGTGACCACCTGTCTGATGTGTGGCCCAGACATGGCCGACACCCACCCTCTCCACCTGTGAGACAACGAGCAAGCCACACTGACAGCGCTAGCACATCTAATCAGAAGACCTCCTCTGCTAAAGACCTGATGCGTGGAACTGAGGTGGCTCCTCCACCGTCATCGTCAAGTTACAAGCAAGTTTCAGGCTCTCCTTCCTGGCTTTCCAATATCACAAGTTCAACCTTCGGGAAAAAACAGCCAAAAGGCATGCAAACTGTGTCCAGTGGTGGCAACAGCCTGATTTCAAAGTTCAAGAATTACAATGCTAGCAAATACAGCAGCTCTTGTGGAAACACACTTGGGGATTTTCTCAAGAATGCAACCACTGGCACCAACACAAGCAGCAGTGGCTTCAGCAGTGCAGAGACAAACACCTGCCGACAGGAAAAGGATCACACCCCAGCTGGCTGTGACCTGAACAGTCGCAGCTTTAGCCAGCAGACCTCCACTGATGTCAACAGGTCTGGATGCAAAGACACAGCTCAATGGGGTGATTATCAACAGCATCAGCGGCATGGCAGCAACAGTGTCACAAAAGACTCTGGTTTAGATTTTTCTCACATCCAAGATGGTGGCGTGCCTGAAAAGTGCACTAATGCAGAACAGTCAAAGAGAAACCACAGAGCTAAAAATGATGCATCAAGGTCCAAGTCTCTTGGAGATATTGTAGAACCTTTGAATTCTGATAGGCTCAGGCCAATTAGACAAAAGACTAGAAATGCTGTTGTCAGCATTCTTGATGATGGAGAAGTTGCTTTGGAGTTTTTTCATCATAAAAATGGAGAGGATCGAGTTTTTGAGGTGCTGCGAATATCACAAAATGGGATGAAAATAGCAGTGTATCAGCCAAATGGGAAAACAGGGGTGCCTCTGTCTTCACAGCCCCCTTTTCCCACAGGGTGTGAGTCGACATGTACGTATCTGTTCTCCAATTTGCCATCTAAGTACTGGAAAAAGTACCAGTATGCTACTAGATTTGTTCATCTTGTGCGCAAGAAGACGCCAAAGGTCACTATGTATTCCAAACATGCCAAGTGCATGCTGATGGAAAATTTTCCTCATGCCGACTTTGAAGTCTGCTTTTATAATGGGGCAAAAGTTCACCAGTCGCAGGAGTGTACAAGGATAATCGAGCCAGGCGGAGTATCTTACACTCTGGAATCTGTTGGTGGTCTGGATGGTGTAACTCAGGATATGAAACCCCTGTTAGAGCATGCTCAGAGATGCTATCAACAGTGCGTGCATCTAGAGAGAGTCATCAATAAAGAGGAGAGTGAAAGCAATGGAGGGCAGTACTTTCCATTCATCGTGTGCCGTAAACCACCAGGATCAAGAAATAAACCTTTGTCAAAGGGAACTGATATTCACACTCAAGCGCACGGTCCTAGGCCTCCTGACTCTCTAGAGAACATAACGGTAACATCTCCCAGTACCATAGCACCAGTTAGTACATCTTTACTCTCCTTTGACGGAACCGTAGCCAGTACCTTCCACAATACAAGGCCGTCTTCAGCTGGCAATGATCATAAGTCCATAAGACGATCACAATCCTGTGGTGATGAATCTGAGAAGACCTCCAGATCACAGTGTGGGCAGGACAAAAGAAGCATACAGAGCGTTGTGACCAAGGGTGTTCCCAAACAGGGAACAACTTCATCACCATCATCGAATGTTGTCAAGAGTGTCTTTGTACAAGGAGTAGGTTGGGCTTCTCAGCTGTCGACTGGAGAGGTTTGGGTTCAATACAATGATGGATCTCAGATGGTTGTTCAGTCTTCTGTTACGAGTATCAAATACACAGACAGTGGTGGAATTATAACAAGATACAGTCACTCTGACAGATTACCTGAGTCAATCAAGGACAAGCTTTCTCGTCTCCCAGTCATTATAGAAAGTCTAGTGGCCTCGCCCAAGATGATGTAG

Transcript

ANN24030-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7SNN5	Serine/threonine-protein kinase PLK4 OS=Nematostella vectensis OX=45351 GN=v1g246408 PE=3 SV=1
Q6PAD2	Serine/threonine-protein kinase PLK4 OS=Xenopus laevis OX=8355 GN=plk4 PE=2 SV=1
B3DL84	Serine/threonine-protein kinase PLK4 OS=Xenopus tropicalis OX=8364 GN=plk4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005533 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18190 all species →	Plk4_PB1	Polo-like Kinase 4 Polo Box 1	Domain	Interproscan
PF18409 all species →	Plk4_PB2	Polo-like Kinase 4 Polo Box 2	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033696 all species →	Domain	Plk4, C-terminal polo-box domain	Interproscan
IPR033699 all species →	Domain	Plk4, first cryptic polo-box domain	Interproscan
IPR033698 all species →	Domain	Plk4, second cryptic polo-box domain	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000959 all species →	Domain	POLO box domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR047108 all species →	Homologous_superfamily	Plk4-like, second cryptic polo-box domain superfamily	Interproscan
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR046437 all species →	Homologous_superfamily	Serine/threonine-protein kinase, first cryptic polo-box domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24345 all species →	SERINE/THREONINE-PROTEIN KINASE PLK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000776 all species →	Cellular Component	kinetochore	Interproscan
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0007052 all species →	Biological Process	mitotic spindle organization	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08863	PLK4; polo-like kinase 4	EC:2.7.11.21	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.